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SPhyR: tumor phylogeny estimation from single-cell sequencing data under loss and error

Bioinformatics, 2018-09, Vol.34 (17), p.i671-i679

El-Kebir, Mohammed

2018

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CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data

PLoS computational biology, 2022-10, Vol.18 (10), p.e1010614-e1010614

2022

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Inferring parsimonious migration histories for metastatic cancers

Nature genetics, 2018-05, Vol.50 (5), p.718-726

2018

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Reconstruction of clonal trees and tumor composition from multi-sample sequencing data

Bioinformatics (Oxford, England), 2015-06, Vol.31 (12), p.i62-i70

2015

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Moss enables high sensitivity single-nucleotide variant calling from multiple bulk DNA tumor samples

Nature communications, 2021-04, Vol.12 (1), p.2204-2204, Article 2204

2021

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Jumper enables discontinuous transcript assembly in coronaviruses

Nature communications, 2021-11, Vol.12 (1), p.6728-12, Article 6728

2021

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Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors

PLoS computational biology, 2023-10, Vol.19 (10), p.e1011544

2023

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Parsimonious Clone Tree Integration in cancer

Algorithms for molecular biology, 2022-03, Vol.17 (1), p.3-3, Article 3

2022

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Intra-tumor heterogeneity, turnover rate and karyotype space shape susceptibility to missegregation-induced extinction

PLoS computational biology, 2023-01, Vol.19 (1), p.e1010815-e1010815

2023

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Implications of non-uniqueness in phylogenetic deconvolution of bulk DNA samples of tumors

Algorithms for molecular biology, 2019-09, Vol.14 (1), p.19-19, Article 19

2019

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Distinguishing linear and branched evolution given single-cell DNA sequencing data of tumors

Algorithms for molecular biology, 2021-07, Vol.16 (1), p.1-14, Article 14

2021

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PhyDOSE: Design of follow-up single-cell sequencing experiments of tumors

PLoS computational biology, 2020-10, Vol.16 (10), p.e1008240-e1008240

2020

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Influence of Temperature on the Chromatic Dispersion of Photonic Crystal Fiber by Infiltrating the Air Holes with Water

Journal of optical communications, 2023-04

2023

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Bayesian parameter estimation for automatic annotation of gene functions using observational data and phylogenetic trees

PLoS computational biology, 2021-02, Vol.17 (2), p.e1007948-e1007948

2021

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Transcriptional Profiling of Porcine HCC Xenografts Provides Insights Into Tumor Cell Microenvironment Signaling

Frontiers in genetics, 2021-04, Vol.12, p.657330

2021

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Complexity and algorithms for copy-number evolution problems

Algorithms for molecular biology, 2017-05, Vol.12 (1), p.13-13, Article 13

2017

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Natalie 2.0: Sparse Global Network Alignment as a Special Case of Quadratic Assignment

Algorithms, 2015-12, Vol.8 (4), p.1035-1051

2015

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Optical Code Division Multiple Access for FTTH system

Photonics letters of Poland, 2018-01, Vol.10 (4), p.121

2018

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eXamine: Visualizing annotated networks in Cytoscape [version 1; peer review: 1 approved, 3 approved with reservations]

F1000 research, 2018, Vol.7, p.519

2018

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eXamine: Visualizing annotated networks in Cytoscape

F1000 research, 2018, Vol.7, p.519-519

2018

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CHARACTERISTICS OF DUAL-CORE PHOTONIC CRYSTAL FIBER BY FD-BPM

Journal of Theoretical and Applied Information Technology, 2015-09, Vol.79 (1), p.128-128

2015

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Modeling and predicting cancer clonal evolution with reinforcement learning

Genome research, 2023-07, Vol.33 (7), p.1078

2023

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Computational pan-genomics: status, promises and challenges

Briefings in bioinformatics, 2018-01, Vol.19 (1), p.118-135

2018

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Sampling and summarizing transmission trees with multi-strain infections

Bioinformatics (Oxford, England), 2020-07, Vol.36 (Supplement_1), p.i362-i370

2020

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ClonArch: visualizing the spatial clonal architecture of tumors

Bioinformatics (Oxford, England), 2020-07, Vol.36 (Supplement_1), p.i161-i168

2020

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SPhyR: tumor phylogeny estimation from single-cell sequencing data under loss and error

CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data

Inferring parsimonious migration histories for metastatic cancers

Reconstruction of clonal trees and tumor composition from multi-sample sequencing data

Moss enables high sensitivity single-nucleotide variant calling from multiple bulk DNA tumor samples

Jumper enables discontinuous transcript assembly in coronaviruses

Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors

Parsimonious Clone Tree Integration in cancer

Intra-tumor heterogeneity, turnover rate and karyotype space shape susceptibility to missegregation-induced extinction

Implications of non-uniqueness in phylogenetic deconvolution of bulk DNA samples of tumors

Distinguishing linear and branched evolution given single-cell DNA sequencing data of tumors

PhyDOSE: Design of follow-up single-cell sequencing experiments of tumors

Influence of Temperature on the Chromatic Dispersion of Photonic Crystal Fiber by Infiltrating the Air Holes with Water

Bayesian parameter estimation for automatic annotation of gene functions using observational data and phylogenetic trees

Transcriptional Profiling of Porcine HCC Xenografts Provides Insights Into Tumor Cell Microenvironment Signaling

Complexity and algorithms for copy-number evolution problems

Natalie 2.0: Sparse Global Network Alignment as a Special Case of Quadratic Assignment

Optical Code Division Multiple Access for FTTH system

eXamine: Visualizing annotated networks in Cytoscape [version 1; peer review: 1 approved, 3 approved with reservations]

eXamine: Visualizing annotated networks in Cytoscape

CHARACTERISTICS OF DUAL-CORE PHOTONIC CRYSTAL FIBER BY FD-BPM

Modeling and predicting cancer clonal evolution with reinforcement learning

Computational pan-genomics: status, promises and challenges

Sampling and summarizing transmission trees with multi-strain infections

ClonArch: visualizing the spatial clonal architecture of tumors

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