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Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655

Nucleic acids research, 2018-11, Vol.46 (20), p.10682

2018

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The potential of circulating tumor DNA methylation analysis for the early detection and management of ovarian cancer

Genome medicine, 2017-12, Vol.9 (1), p.116-116, Article 116

2017

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ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis

PloS one, 2016-02, Vol.11 (2), p.e0149263-e0149263

2016

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Integrated enrichment analysis and pathway-centered visualization of metabolomics, proteomics, transcriptomics, and genomics data by using the InCroMAP software

Journal of chromatography. B, Analytical technologies in the biomedical and life sciences, 2014-09, Vol.966, p.77-82

2014

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Methylation patterns in serum DNA for early identification of disseminated breast cancer

Genome medicine, 2017-12, Vol.9 (1), p.115-115, Article 115

2017

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Cross-platform toxicogenomics for the prediction of non-genotoxic hepatocarcinogenesis in rat

PloS one, 2014-05, Vol.9 (5), p.e97640

2014

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Evaluation of toxicogenomics approaches for assessing the risk of nongenotoxic carcinogenicity in rat liver

PloS one, 2014-05, Vol.9 (5), p.e97678

2014

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TFpredict and SABINE: sequence-based prediction of structural and functional characteristics of transcription factors

PloS one, 2013-12, Vol.8 (12), p.e82238-e82238

2013

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Linking the epigenome to the genome: correlation of different features to DNA methylation of CpG islands

PloS one, 2012-04, Vol.7 (4), p.e35327-e35327

2012

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ToxDBScan: Large-scale similarity screening of toxicological databases for drug candidates

International journal of molecular sciences, 2014-10, Vol.15 (10), p.19037-19055

2014

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A toxicogenomic approach for the prediction of murine hepatocarcinogenesis using ensemble feature selection

PloS one, 2013-09, Vol.8 (9), p.e73938

2013

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Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays

BMC bioinformatics, 2011-02, Vol.12 (1), p.55-55, Article 55

2011

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Qualitative translation of relations from BioPAX to SBML qual

Bioinformatics (Oxford, England), 2012-10, Vol.28 (20), p.2648-2653

2012

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RPPApipe: A pipeline for the analysis of reverse-phase protein array data

BioSystems, 2014-08, Vol.122, p.19-24

2014

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Predicting DNA-binding specificities of eukaryotic transcription factors

PloS one, 2010-11, Vol.5 (11), p.e13876-e13876

2010

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SBML Level 3: an extensible format for the exchange and reuse of biological models

Molecular systems biology, 2020-08, Vol.16 (8), p.e9110-n/a

2020

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Pathway-based visualization of cross-platform microarray datasets

Bioinformatics, 2012-12, Vol.28 (23), p.3021-3026

2012

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InCroMAP: integrated analysis of cross-platform microarray and pathway data

Bioinformatics, 2013-02, Vol.29 (4), p.506-508

2013

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Network analysis of coronary artery disease risk genes elucidates disease mechanisms and druggable targets

Scientific reports, 2018-02, Vol.8 (1), p.3434-14, Article 3434

2018

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SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks

BMC systems biology, 2015-10, Vol.9 (1), p.68-68, Article 68

2015

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JSBML 1.0: providing a smorgasbord of options to encode systems biology models

Bioinformatics, 2015-10, Vol.31 (20), p.3383-3386

2015

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Abstract 810: Non-genotoxic hepatocarcinogens induce growth and anti-apoptotic pathways in hepatocytes via mesenchymal cytokines

Cancer research (Chicago, Ill.), 2015-08, Vol.75 (15_Supplement), p.810-810

2015

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Proinflammatory mesenchymal effects of the non-genotoxic hepatocarcinogen phenobarbital: a novel mechanism of antiapoptosis and tumor promotion

Carcinogenesis (New York), 2015-12, Vol.36 (12), p.1521

2015

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Ha‐ras and β‐catenin oncoproteins orchestrate metabolic programs in mouse liver tumors

International journal of cancer, 2014-10, Vol.135 (7), p.1574-1585

2014

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Mesenchyme-derived factors enhance preneoplastic growth by non-genotoxic carcinogens in rat liver

Archives of toxicology, 2018-02, Vol.92 (2), p.953-966

2018

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Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655

The potential of circulating tumor DNA methylation analysis for the early detection and management of ovarian cancer

ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis

Integrated enrichment analysis and pathway-centered visualization of metabolomics, proteomics, transcriptomics, and genomics data by using the InCroMAP software

Methylation patterns in serum DNA for early identification of disseminated breast cancer

Cross-platform toxicogenomics for the prediction of non-genotoxic hepatocarcinogenesis in rat

Evaluation of toxicogenomics approaches for assessing the risk of nongenotoxic carcinogenicity in rat liver

TFpredict and SABINE: sequence-based prediction of structural and functional characteristics of transcription factors

Linking the epigenome to the genome: correlation of different features to DNA methylation of CpG islands

ToxDBScan: Large-scale similarity screening of toxicological databases for drug candidates

A toxicogenomic approach for the prediction of murine hepatocarcinogenesis using ensemble feature selection

Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays

Qualitative translation of relations from BioPAX to SBML qual

RPPApipe: A pipeline for the analysis of reverse-phase protein array data

Predicting DNA-binding specificities of eukaryotic transcription factors

SBML Level 3: an extensible format for the exchange and reuse of biological models

Pathway-based visualization of cross-platform microarray datasets

InCroMAP: integrated analysis of cross-platform microarray and pathway data

Network analysis of coronary artery disease risk genes elucidates disease mechanisms and druggable targets

SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks

JSBML 1.0: providing a smorgasbord of options to encode systems biology models

Abstract 810: Non-genotoxic hepatocarcinogens induce growth and anti-apoptotic pathways in hepatocytes via mesenchymal cytokines

Proinflammatory mesenchymal effects of the non-genotoxic hepatocarcinogen phenobarbital: a novel mechanism of antiapoptosis and tumor promotion

Ha‐ras and β‐catenin oncoproteins orchestrate metabolic programs in mouse liver tumors

Mesenchyme-derived factors enhance preneoplastic growth by non-genotoxic carcinogens in rat liver

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