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Detecting pairwise correlations in spike trains: an objective comparison of methods and application to the study of retinal waves

The Journal of neuroscience, 2014-10, Vol.34 (43), p.14288-14303

2014

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Ten simple rules for writing Dockerfiles for reproducible data science

PLoS computational biology, 2020-11, Vol.16 (11), p.e1008316-e1008316

2020

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From random to regular: Variation in the patterning of retinal mosaics

Journal of comparative neurology (1911), 2020-09, Vol.528 (13), p.2135-2160

2020

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Functional characterization of human pluripotent stem cell-derived cortical networks differentiated on laminin-521 substrate: comparison to rat cortical cultures

Scientific reports, 2019-11, Vol.9 (1), p.17125-15, Article 17125

2019

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Toward standard practices for sharing computer code and programs in neuroscience

Nature neuroscience, 2017-06, Vol.20 (6), p.770

2017

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Bayesian model selection for multilevel models using integrated likelihoods

PloS one, 2023-02, Vol.18 (2), p.e0280046-e0280046

2023

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A comparison of computational methods for detecting bursts in neuronal spike trains and their application to human stem cell-derived neuronal networks

Journal of neurophysiology, 2016-08, Vol.116 (2), p.306-321

2016

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CODECHECK: an Open Science initiative for the independent execution of computations underlying research articles during peer review to improve reproducibility [version 2; peer review: 1 approved, 1 approved with reservations]

F1000 research, 2021, Vol.10, p.253-253

2021

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Characterization of Early Cortical Neural Network Development in Multiwell Microelectrode Array Plates

Journal of biomolecular screening, 2016-06, Vol.21 (5), p.510-519

2016

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DeepClean: Self-Supervised Artefact Rejection for Intensive Care Waveform Data Using Deep Generative Learning

Intracranial Pressure and Neuromonitoring XVII, p.235-241

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meaRtools: An R package for the analysis of neuronal networks recorded on microelectrode arrays

PLoS computational biology, 2018-10, Vol.14 (10), p.e1006506-e1006506

2018

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Can retinal ganglion cell dipoles seed iso-orientation domains in the visual cortex?

PloS one, 2014-01, Vol.9 (1), p.e86139-e86139

2014

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Homeostatic Activity-Dependent Tuning of Recurrent Networks for Robust Propagation of Activity

The Journal of neuroscience, 2016-03, Vol.36 (13), p.3722-3734

2016

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CODECHECK: an Open Science initiative for the independent execution of computations underlying research articles during peer review to improve reproducibility [version 1; peer review: 1 approved, 1 approved with reservations]

F1000 research, 2021, Vol.10, p.253

2021

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Burst-time-dependent plasticity robustly guides ON/OFF segregation in the lateral geniculate nucleus

PLoS computational biology, 2009-12, Vol.5 (12), p.e1000618-e1000618

2009

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A quick guide to teaching R programming to computational biology students

PLoS computational biology, 2009-08, Vol.5 (8), p.e1000482-e1000482

2009

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Neural circuits for peristaltic wave propagation in crawling Drosophila larvae: analysis and modeling

Frontiers in computational neuroscience, 2013, Vol.7, p.24-24

2013

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Sepsis-3 criteria in AmsterdamUMCdb: open-source code implementation

GigaByte (Hong Kong, China), 2022-03, Vol.2022, p.gigabyte45-7

2022

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Geniculo-Cortical Projection Diversity Revealed within the Mouse Visual Thalamus

PloS one, 2016-01, Vol.11 (1), p.e0144846-e0144846

2016

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Burst Detection Methods

Advances in neurobiology, 2019, Vol.22, p.185-206

2019

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Quantitative differences in developmental profiles of spontaneous activity in cortical and hippocampal cultures

Neural development, 2015-01, Vol.10 (1), p.1-1, Article 1

2015

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Canalization of genetic and pharmacological perturbations in developing primary neuronal activity patterns

Neuropharmacology, 2016-01, Vol.100, p.47-55

2016

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A molecular mechanism for the topographic alignment of convergent neural maps

eLife, 2017-03, Vol.6

2017

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A data repository and analysis framework for spontaneous neural activity recordings in developing retina

Gigascience, 2014-03, Vol.3 (1), p.3-3, Article 3

2014

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Modeling developmental patterns of spontaneous activity

Current opinion in neurobiology, 2011-10, Vol.21 (5), p.679-684

2011

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Detecting pairwise correlations in spike trains: an objective comparison of methods and application to the study of retinal waves

Ten simple rules for writing Dockerfiles for reproducible data science

From random to regular: Variation in the patterning of retinal mosaics

Functional characterization of human pluripotent stem cell-derived cortical networks differentiated on laminin-521 substrate: comparison to rat cortical cultures

Toward standard practices for sharing computer code and programs in neuroscience

Bayesian model selection for multilevel models using integrated likelihoods

A comparison of computational methods for detecting bursts in neuronal spike trains and their application to human stem cell-derived neuronal networks

CODECHECK: an Open Science initiative for the independent execution of computations underlying research articles during peer review to improve reproducibility [version 2; peer review: 1 approved, 1 approved with reservations]

Characterization of Early Cortical Neural Network Development in Multiwell Microelectrode Array Plates

DeepClean: Self-Supervised Artefact Rejection for Intensive Care Waveform Data Using Deep Generative Learning

meaRtools: An R package for the analysis of neuronal networks recorded on microelectrode arrays

Can retinal ganglion cell dipoles seed iso-orientation domains in the visual cortex?

Homeostatic Activity-Dependent Tuning of Recurrent Networks for Robust Propagation of Activity

CODECHECK: an Open Science initiative for the independent execution of computations underlying research articles during peer review to improve reproducibility [version 1; peer review: 1 approved, 1 approved with reservations]

Burst-time-dependent plasticity robustly guides ON/OFF segregation in the lateral geniculate nucleus

A quick guide to teaching R programming to computational biology students

Neural circuits for peristaltic wave propagation in crawling Drosophila larvae: analysis and modeling

Sepsis-3 criteria in AmsterdamUMCdb: open-source code implementation

Geniculo-Cortical Projection Diversity Revealed within the Mouse Visual Thalamus

Burst Detection Methods

Quantitative differences in developmental profiles of spontaneous activity in cortical and hippocampal cultures

Canalization of genetic and pharmacological perturbations in developing primary neuronal activity patterns

A molecular mechanism for the topographic alignment of convergent neural maps

A data repository and analysis framework for spontaneous neural activity recordings in developing retina

Modeling developmental patterns of spontaneous activity

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