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Considerations for the Analysis of Bacterial Membrane Vesicles: Methods of Vesicle Production and Quantification Can Influence Biological and Experimental Outcomes

Microbiology spectrum, 2021-12, Vol.9 (3), p.e0127321-e0127321

2021

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Global analysis of lysine acetylation suggests the involvement of protein acetylation in diverse biological processes in rice (Oryza sativa)

PloS one, 2014-02, Vol.9 (2), p.e89283-e89283

2014

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Processing of Human Toll-like Receptor 7 by Furin-like Proprotein Convertases Is Required for Its Accumulation and Activity in Endosomes

Immunity (Cambridge, Mass.), 2013-10, Vol.39 (4), p.711-721

2013

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Roles of Eicosanoids in Regulating Inflammation and Neutrophil Migration as an Innate Host Response to Bacterial Infections

Infection and immunity, 2021-07, Vol.89 (8), p.e0009521-e0009521

2021

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Characterization and proteomic analysis of outer membrane vesicles from a commensal microbe, Enterobacter cloacae

Journal of proteomics, 2021-01, Vol.231, p.103994-103994, Article 103994

2021

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Ubiquitinated Hepatitis D Antigen-Loaded Microvesicles Induce a Potent Specific Cellular Immune Response to Inhibit HDV Replication in Vivo

Microbiology spectrum, 2021-12, Vol.9 (3), p.e0102421-e0102421

2021

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Activity-Based Proteomic Profiling of Deubiquitinating Enzymes in Salmonella-Infected Macrophages Leads to Identification of Putative Function of UCH-L5 in Inflammasome Regulation

PloS one, 2015-08, Vol.10 (8), p.e0135531-e0135531

2015

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Antigen-encapsulating host extracellular vesicles derived from Salmonella-infected cells stimulate pathogen-specific Th1-type responses in vivo

PLoS pathogens, 2021-05, Vol.17 (5), p.e1009465-e1009465

2021

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SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

Genome research, 2018-03, Vol.28 (3), p.396-411

2018

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Group B Streptococcus CAMP Factor Does Not Contribute to Interactions with the Vaginal Epithelium and Is Dispensable for Vaginal Colonization in Mice

Microbiology spectrum, 2021-12, Vol.9 (3), p.e0105821-e0105821

2021

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Salmonella enterica Serovar Typhimurium Alters the Extracellular Proteome of Macrophages and Leads to the Production of Proinflammatory Exosomes

Infection and immunity, 2018-02, Vol.86 (2)

2018

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A Novel Dibenzoxazepine Attenuates Intracellular Salmonella Typhimurium Oxidative Stress Resistance

Microbiology spectrum, 2021-12, Vol.9 (3), p.e0151921-e0151921

2021

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Structural basis and specificity of human otubain 1-mediated deubiquitination

Biochemical journal, 2009-03, Vol.418 (2), p.379-390

2009

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USP8 inhibition regulates autophagy flux and controls Salmonella infection

Frontiers in cellular and infection microbiology, 2023-03, Vol.13, p.1070271-1070271

2023

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Deubiquitinases: Novel Therapeutic Targets in Immune Surveillance?

Mediators of Inflammation, 2016-01, Vol.2016 (2016), p.1053-1065-095

2016

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Proteome-wide lysine acetylation identification in developing rice (Oryza sativa) seeds and protein co-modification by acetylation, succinylation, ubiquitination, and phosphorylation

Biochimica et biophysica acta. Proteins and proteomics, 2018-03, Vol.1866 (3), p.451-463

2018

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Intravacuolar Pathogens Hijack Host Extracellular Vesicle Biogenesis to Secrete Virulence Factors

Frontiers in immunology, 2021-04, Vol.12, p.662944-662944

2021

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Hectd3 promotes pathogenic Th17 lineage through Stat3 activation and Malt1 signaling in neuroinflammation

Nature communications, 2019-02, Vol.10 (1), p.701-701, Article 701

2019

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CNS-Targeting Therapies for Lysosomal Storage Diseases: Current Advances and Challenges

Frontiers in molecular biosciences, 2020-11, Vol.7, p.559804-559804

2020

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Long-term Changes in the Central Amygdala Proteome in Rats with a History of Chronic Cocaine Self-administration

Neuroscience, 2020-09, Vol.443, p.93-109

2020

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SILAC-based quantitative proteomic analysis of human lung cell response to copper oxide nanoparticles

PloS one, 2014-12, Vol.9 (12), p.e114390-e114390

2014

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Bacterial extracellular vesicles control murine norovirus infection through modulation of antiviral immune responses

Frontiers in immunology, 2022-08, Vol.13, p.909949-909949

2022

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Differential Sensitivity of Hypoxia Inducible Factor Hydroxylation Sites to Hypoxia and Hydroxylase Inhibitors

The Journal of biological chemistry, 2011-04, Vol.286 (15), p.13041-13051

2011

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USP47 Is a Deubiquitylating Enzyme that Regulates Base Excision Repair by Controlling Steady-State Levels of DNA Polymerase β

Molecular cell, 2011-03, Vol.41 (5), p.609-615

2011

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Pharmacological targets in the ubiquitin system offer new ways of treating cancer, neurodegenerative disorders and infectious diseases

Expert reviews in molecular medicine, 2011-11, Vol.13, p.e35-e35, Article e35

2011

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Considerations for the Analysis of Bacterial Membrane Vesicles: Methods of Vesicle Production and Quantification Can Influence Biological and Experimental Outcomes

Global analysis of lysine acetylation suggests the involvement of protein acetylation in diverse biological processes in rice (Oryza sativa)

Processing of Human Toll-like Receptor 7 by Furin-like Proprotein Convertases Is Required for Its Accumulation and Activity in Endosomes

Roles of Eicosanoids in Regulating Inflammation and Neutrophil Migration as an Innate Host Response to Bacterial Infections

Characterization and proteomic analysis of outer membrane vesicles from a commensal microbe, Enterobacter cloacae

Ubiquitinated Hepatitis D Antigen-Loaded Microvesicles Induce a Potent Specific Cellular Immune Response to Inhibit HDV Replication in Vivo

Activity-Based Proteomic Profiling of Deubiquitinating Enzymes in Salmonella-Infected Macrophages Leads to Identification of Putative Function of UCH-L5 in Inflammasome Regulation

Antigen-encapsulating host extracellular vesicles derived from Salmonella-infected cells stimulate pathogen-specific Th1-type responses in vivo

SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

Group B Streptococcus CAMP Factor Does Not Contribute to Interactions with the Vaginal Epithelium and Is Dispensable for Vaginal Colonization in Mice

Salmonella enterica Serovar Typhimurium Alters the Extracellular Proteome of Macrophages and Leads to the Production of Proinflammatory Exosomes

A Novel Dibenzoxazepine Attenuates Intracellular Salmonella Typhimurium Oxidative Stress Resistance

Structural basis and specificity of human otubain 1-mediated deubiquitination

USP8 inhibition regulates autophagy flux and controls Salmonella infection

Deubiquitinases: Novel Therapeutic Targets in Immune Surveillance?

Proteome-wide lysine acetylation identification in developing rice (Oryza sativa) seeds and protein co-modification by acetylation, succinylation, ubiquitination, and phosphorylation

Intravacuolar Pathogens Hijack Host Extracellular Vesicle Biogenesis to Secrete Virulence Factors

Hectd3 promotes pathogenic Th17 lineage through Stat3 activation and Malt1 signaling in neuroinflammation

CNS-Targeting Therapies for Lysosomal Storage Diseases: Current Advances and Challenges

Long-term Changes in the Central Amygdala Proteome in Rats with a History of Chronic Cocaine Self-administration

SILAC-based quantitative proteomic analysis of human lung cell response to copper oxide nanoparticles

Bacterial extracellular vesicles control murine norovirus infection through modulation of antiviral immune responses

Differential Sensitivity of Hypoxia Inducible Factor Hydroxylation Sites to Hypoxia and Hydroxylase Inhibitors

USP47 Is a Deubiquitylating Enzyme that Regulates Base Excision Repair by Controlling Steady-State Levels of DNA Polymerase β

Pharmacological targets in the ubiquitin system offer new ways of treating cancer, neurodegenerative disorders and infectious diseases

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