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Stochastic modelling of a three-dimensional glycogen granule synthesis and impact of the branching enzyme

PLoS computational biology, 2023-05, Vol.19 (5), p.e1010694-e1010694

2023

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Taxonomic database and cut-off value for processing mcrA gene 454 pyrosequencing data by MOTHUR

Journal of microbiological methods, 2014-08, Vol.103, p.3-5

2014

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Mathematical properties of optimal fluxes in cellular reaction networks at balanced growth

PLoS computational biology, 2023-06, Vol.19 (6), p.e1011156-e1011156

2023

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Constructing and analysing dynamic models with modelbase v1.2.3: a software update

BMC bioinformatics, 2021-04, Vol.22 (1), p.203-203, Article 203

2021

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Balancing energy supply during photosynthesis – a theoretical perspective

Physiologia plantarum, 2019-05, Vol.166 (1), p.392-402

2019

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Theoretical and experimental approaches to understand the biosynthesis of starch granules in a physiological context

Photosynthesis research, 2020-07, Vol.145 (1), p.55-70

2020

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Short-term acclimation of the photosynthetic electron transfer chain to changing light: a mathematical model

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2014-04, Vol.369 (1640), p.20130223

2014

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Thermodynamic Limits and Optimality of Microbial Growth

Entropy (Basel, Switzerland), 2020-02, Vol.22 (3), p.277

2020

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Emergent Subpopulation Behavior Uncovered with a Community Dynamic Metabolic Model of Escherichia coli Diauxic Growth

mSystems, 2019-01, Vol.4 (1)

2019

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Microbial Pathway Thermodynamics: Stoichiometric Models Unveil Anabolic and Catabolic Processes

Life (Basel, Switzerland), 2024-02, Vol.14 (2), p.247

2024

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A generic rate law for surface-active enzymes

FEBS letters, 2013-09, Vol.587 (17), p.2882-2890

2013

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Computational Analysis of Alternative Photosynthetic Electron Flows Linked With Oxidative Stress

Frontiers in plant science, 2021-10, Vol.12, p.750580-750580

2021

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Adjustment of carbon fluxes to light conditions regulates the daily turnover of starch in plants: a computational model

Molecular bioSystems, 2014-01, Vol.10 (3), p.613-627

2014

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Data-driven dynamical model indicates that the heat shock response in Chlamydomonas reinhardtii is tailored to handle natural temperature variation

Journal of the Royal Society interface, 2018-05, Vol.15 (142), p.20170965

2018

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DeepLOKI- a deep learning based approach to identify zooplankton taxa on high-resolution images from the optical plankton recorder LOKI

Frontiers in Marine Science, 2023-11, Vol.10

2023

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Modelling Robust Feedback Control Mechanisms That Ensure Reliable Coordination of Histone Gene Expression with DNA Replication

PloS one, 2016-10, Vol.11 (10), p.e0165848-e0165848

2016

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Network Reconstruction and Modelling Made Reproducible with moped

Metabolites, 2022-03, Vol.12 (4), p.275

2022

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Expanding metabolic networks: scopes of compounds, robustness, and evolution

Journal of molecular evolution, 2005-10, Vol.61 (4), p.498-512

2005

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A Bacterial Glucanotransferase Can Replace the Complex Maltose Metabolism Required for Starch to Sucrose Conversion in Leaves at Night

The Journal of biological chemistry, 2013-10, Vol.288 (40), p.28581-28598

2013

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Mathematical model of a serine integrase-controlled toggle switch with a single input

Journal of the Royal Society interface, 2018-06, Vol.15 (143), p.20180160

2018

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Review and perspective on mathematical modeling of microbial ecosystems

Biochemical Society transactions, 2018-04, Vol.46 (2), p.403-412

2018

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A minimal mathematical model of nonphotochemical quenching of chlorophyll fluorescence

BioSystems, 2011-02, Vol.103 (2), p.196-204

2011

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Ground state robustness as an evolutionary design principle in signaling networks

PloS one, 2009-12, Vol.4 (12), p.e8001-e8001

2009

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StrigoQuant: A genetically encoded biosensor for quantifying strigolactone activity and specificity

Science advances, 2016-11, Vol.2 (11), p.e1601266-e1601266

2016

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Building Mathematical Models of Biological Systems with modelbase

Journal of open research software, 2018-11, Vol.6 (1), p.24

2018

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Stochastic modelling of a three-dimensional glycogen granule synthesis and impact of the branching enzyme

Taxonomic database and cut-off value for processing mcrA gene 454 pyrosequencing data by MOTHUR

Mathematical properties of optimal fluxes in cellular reaction networks at balanced growth

Constructing and analysing dynamic models with modelbase v1.2.3: a software update

Balancing energy supply during photosynthesis – a theoretical perspective

Theoretical and experimental approaches to understand the biosynthesis of starch granules in a physiological context

Short-term acclimation of the photosynthetic electron transfer chain to changing light: a mathematical model

Thermodynamic Limits and Optimality of Microbial Growth

Emergent Subpopulation Behavior Uncovered with a Community Dynamic Metabolic Model of Escherichia coli Diauxic Growth

Microbial Pathway Thermodynamics: Stoichiometric Models Unveil Anabolic and Catabolic Processes

A generic rate law for surface-active enzymes

Computational Analysis of Alternative Photosynthetic Electron Flows Linked With Oxidative Stress

Adjustment of carbon fluxes to light conditions regulates the daily turnover of starch in plants: a computational model

Data-driven dynamical model indicates that the heat shock response in Chlamydomonas reinhardtii is tailored to handle natural temperature variation

DeepLOKI- a deep learning based approach to identify zooplankton taxa on high-resolution images from the optical plankton recorder LOKI

Modelling Robust Feedback Control Mechanisms That Ensure Reliable Coordination of Histone Gene Expression with DNA Replication

Network Reconstruction and Modelling Made Reproducible with moped

Expanding metabolic networks: scopes of compounds, robustness, and evolution

A Bacterial Glucanotransferase Can Replace the Complex Maltose Metabolism Required for Starch to Sucrose Conversion in Leaves at Night

Mathematical model of a serine integrase-controlled toggle switch with a single input

Review and perspective on mathematical modeling of microbial ecosystems

A minimal mathematical model of nonphotochemical quenching of chlorophyll fluorescence

Ground state robustness as an evolutionary design principle in signaling networks

StrigoQuant: A genetically encoded biosensor for quantifying strigolactone activity and specificity

Building Mathematical Models of Biological Systems with modelbase

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