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Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation

PLoS biology, 2019-12, Vol.17 (12), p.e3000494-e3000494

2019

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The Challenges of Resolving a Rapid, Recent Radiation: Empirical and Simulated Phylogenomics of Philippine Shrews

Systematic biology, 2015-09, Vol.64 (5), p.727-740

2015

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SEGUL: Ultrafast, memory‐efficient and mobile‐friendly software for manipulating and summarizing phylogenomic datasets

Molecular ecology resources, 2024-10, Vol.24 (7), p.e13964-n/a

2024

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Molecules and fossils tell distinct yet complementary stories of mammal diversification

Current biology, 2021-10, Vol.31 (19), p.4195-4206.e3

2021

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A phylogenomic rodent tree reveals the repeated evolution of masseter architectures

Proceedings of the Royal Society. B, Biological sciences, 2019-05, Vol.286 (1902), p.20190672-20190672

2019

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Rethinking host range in Pneumocystis

PLoS pathogens, 2020-09, Vol.16 (9), p.e1008824-e1008824

2020

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Repeated evolution of carnivory among Indo-Australian rodents

Evolution, 2016-03, Vol.70 (3), p.653-665

2016

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Oceanic islands of Wallacea as a source for dispersal and diversification of murine rodents

Journal of biogeography, 2019-12, Vol.46 (12), p.2752-2768

2019

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Convergent evolution of olfactory and thermoregulatory capacities in small amphibious mammals

Proceedings of the National Academy of Sciences - PNAS, 2020-04, Vol.117 (16), p.8958-8965

2020

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Do Geological or Climatic Processes Drive Speciation in Dynamic Archipelagos? the Tempo and Mode of Diversification in Southeast Asian Shrews

Evolution, 2009-10, Vol.63 (10), p.2595-2610

2009

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Convergent evolution of an extreme dietary specialisation, the olfactory system of worm-eating rodents

Scientific reports, 2018-12, Vol.8 (1), p.17806-13, Article 17806

2018

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Investigating Difficult Nodes in the Placental Mammal Tree with Expanded Taxon Sampling and Thousands of Ultraconserved Elements

Genome biology and evolution, 2017-09, Vol.9 (9), p.2308-2321

2017

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Full-Likelihood Genomic Analysis Clarifies a Complex History of Species Divergence and Introgression: The Example of the erato-sara Group of Heliconius Butterflies

Systematic biology, 2022-02, Vol.71 (5), p.1159-1177

2022

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Single-locus species delimitation: a test of the mixed Yule–coalescent model, with an empirical application to Philippine round-leaf bats

Proceedings of the Royal Society. B, Biological sciences, 2012-09, Vol.279 (1743), p.3678-3686

2012

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Relative Time Constraints Improve Molecular Dating

Systematic biology, 2022-07, Vol.71 (4), p.797-809

2022

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Detecting and Removing Sample Contamination in Phylogenomic Data: An Example and its Implications for Cicadidae Phylogeny (Insecta: Hemiptera)

Systematic biology, 2022-10, Vol.71 (6), p.1504-1523

2022

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Evolutionary Processes of Diversification in a Model Island Archipelago

Annual review of ecology, evolution, and systematics, 2013-01, Vol.44 (1), p.411-435

2013

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The role of repeated sea-level fluctuations in the generation of shrew (Soricidae: Crocidura) diversity in the Philippine Archipelago

Molecular phylogenetics and evolution, 2009-10, Vol.53 (1), p.171-181

2009

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Detecting Phylogenetic Signal and Adaptation in Papionin Cranial Shape by Decomposing Variation at Different Spatial Scales

Systematic biology, 2021-06, Vol.70 (4), p.694-706

2021

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Different Evolutionary Pathways Lead to Incomplete Convergence of Elongate Body Shapes in Carnivoran Mammals

Systematic biology, 2022-06, Vol.71 (4), p.788-796

2022

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Wagering with an incomplete deck—refining conservation plans for the New Mexico Meadow Jumping Mouse ( Zapus luteus luteus )

Journal of mammalogy, 2023-10, Vol.104 (5), p.1019-1035

2023

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Local endemism and within-island diversification of shrews illustrate the importance of speciation in building Sundaland mammal diversity

Molecular ecology, 2016-10, Vol.25 (20), p.5158-5173

2016

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Modeling Mito-nuclear Compatibility and Its Role in Species Identification

Systematic biology, 2021-01, Vol.70 (1), p.133-144

2021

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Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation

The Challenges of Resolving a Rapid, Recent Radiation: Empirical and Simulated Phylogenomics of Philippine Shrews

SEGUL: Ultrafast, memory‐efficient and mobile‐friendly software for manipulating and summarizing phylogenomic datasets

Molecules and fossils tell distinct yet complementary stories of mammal diversification

A phylogenomic rodent tree reveals the repeated evolution of masseter architectures

Rethinking host range in Pneumocystis

Repeated evolution of carnivory among Indo-Australian rodents

Oceanic islands of Wallacea as a source for dispersal and diversification of murine rodents

Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent

Convergent evolution of olfactory and thermoregulatory capacities in small amphibious mammals

Do Geological or Climatic Processes Drive Speciation in Dynamic Archipelagos? the Tempo and Mode of Diversification in Southeast Asian Shrews

Phylogenomic Discordance in the Eared Seals is best explained by Incomplete Lineage Sorting following Explosive Radiation in the Southern Hemisphere

Convergent evolution of an extreme dietary specialisation, the olfactory system of worm-eating rodents

Investigating Difficult Nodes in the Placental Mammal Tree with Expanded Taxon Sampling and Thousands of Ultraconserved Elements

Full-Likelihood Genomic Analysis Clarifies a Complex History of Species Divergence and Introgression: The Example of the erato-sara Group of Heliconius Butterflies

Single-locus species delimitation: a test of the mixed Yule–coalescent model, with an empirical application to Philippine round-leaf bats

Relative Time Constraints Improve Molecular Dating

Detecting and Removing Sample Contamination in Phylogenomic Data: An Example and its Implications for Cicadidae Phylogeny (Insecta: Hemiptera)

Evolutionary Processes of Diversification in a Model Island Archipelago

The role of repeated sea-level fluctuations in the generation of shrew (Soricidae: Crocidura) diversity in the Philippine Archipelago

Detecting Phylogenetic Signal and Adaptation in Papionin Cranial Shape by Decomposing Variation at Different Spatial Scales

Different Evolutionary Pathways Lead to Incomplete Convergence of Elongate Body Shapes in Carnivoran Mammals

Wagering with an incomplete deck—refining conservation plans for the New Mexico Meadow Jumping Mouse ( Zapus luteus luteus )

Local endemism and within-island diversification of shrews illustrate the importance of speciation in building Sundaland mammal diversity

Modeling Mito-nuclear Compatibility and Its Role in Species Identification

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