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EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexes

Nucleic acids research, 2023-01, Vol.51 (D1), p.D564-D570

2023

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A novel non-canonical Wnt signature for prostate cancer aggressiveness

Oncotarget, 2017-02, Vol.8 (6), p.9572-9586

2017

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MACPET: model-based analysis for ChIA-PET

Biostatistics (Oxford, England), 2020-07, Vol.21 (3), p.625-639

2020

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DNA hypermethylation associated with upregulated gene expression in prostate cancer demonstrates the diversity of epigenetic regulation

BMC medical genomics, 2020-01, Vol.13 (1), p.6-6, Article 6

2020

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DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysis

Clinical epigenetics, 2019-12, Vol.11 (1), p.193-193, Article 193

2019

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Gene regulation in the immediate-early response process

Advances in biological regulation, 2016-09, Vol.62, p.37-49

2016

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Characterization of POLE c.1373A > T p.(Tyr458Phe), causing high cancer risk

Molecular genetics and genomics : MGG, 2023-05, Vol.298 (3), p.555-566

2023

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Use of multigene‐panel identifies pathogenic variants in several CRC‐predisposing genes in patients previously tested for Lynch Syndrome

Clinical genetics, 2017-10, Vol.92 (4), p.405-414

2017

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Gene duplications in prokaryotes can be associated with environmental adaptation

BMC genomics, 2010-10, Vol.11 (1), p.588-588, Article 588

2010

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A novel POLE mutation associated with cancers of colon, pancreas, ovaries and small intestine

Familial cancer, 2015-09, Vol.14 (3), p.437-448

2015

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Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

Nucleic acids research, 2017-01, Vol.45 (D1), p.D737-D743

2017

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Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication

Nucleic acids research, 2013-03, Vol.41 (5), p.2846-2856

2013

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Measures of co-expression for improved function prediction of long non-coding RNAs

BMC bioinformatics, 2018-12, Vol.19 (1), p.533-533, Article 533

2018

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Enhanced identification of significant regulators of gene expression

BMC bioinformatics, 2020-04, Vol.21 (1), p.134-134, Article 134

2020

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TopoICSim: a new semantic similarity measure based on gene ontology

BMC bioinformatics, 2016-07, Vol.17 (1), p.296-296, Article 296

2016

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Uracil in DNA--occurrence, consequences and repair

Oncogene, 2002-12, Vol.21 (58), p.8935-8948

2002

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Cell cycle regulation of human DNA repair and chromatin remodeling genes

DNA repair, 2015-06, Vol.30, p.53-67

2015

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FunHoP analysis reveals upregulation of mitochondrial genes in prostate cancer

PloS one, 2022-10, Vol.17 (10), p.e0275621-e0275621

2022

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Microbial community and metagenome dynamics during biodegradation of dispersed oil reveals potential key-players in cold Norwegian seawater

Marine pollution bulletin, 2018-04, Vol.129 (1), p.370-378

2018

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Assessment of composite motif discovery methods

BMC bioinformatics, 2008-02, Vol.9 (1), p.123-123, Article 123

2008

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Detecting copy number variation in next generation sequencing data from diagnostic gene panels

BMC medical genomics, 2021-08, Vol.14 (1), p.214-12, Article 214

2021

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EpiFactors: a comprehensive database of human epigenetic factors and complexes

Database : the journal of biological databases and curation, 2015, Vol.2015, p.bav067-bav067

2015

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The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding

BMC bioinformatics, 2012-07, Vol.13 (1), p.176-176, Article 176

2012

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Feature-based classification of human transcription factors into hypothetical sub-classes related to regulatory function

BMC bioinformatics, 2016-11, Vol.17 (1), p.459-459, Article 459

2016

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Isolation of Mutant Alginate Lyases with Cleavage Specificity for Di-guluronic Acid Linkages

The Journal of biological chemistry, 2010-11, Vol.285 (46), p.35284-35292

2010

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EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexes

A novel non-canonical Wnt signature for prostate cancer aggressiveness

MACPET: model-based analysis for ChIA-PET

DNA hypermethylation associated with upregulated gene expression in prostate cancer demonstrates the diversity of epigenetic regulation

DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysis

Gene regulation in the immediate-early response process

Characterization of POLE c.1373A > T p.(Tyr458Phe), causing high cancer risk

Use of multigene‐panel identifies pathogenic variants in several CRC‐predisposing genes in patients previously tested for Lynch Syndrome

Gene duplications in prokaryotes can be associated with environmental adaptation

A novel POLE mutation associated with cancers of colon, pancreas, ovaries and small intestine

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication

Measures of co-expression for improved function prediction of long non-coding RNAs

Enhanced identification of significant regulators of gene expression

TopoICSim: a new semantic similarity measure based on gene ontology

Uracil in DNA--occurrence, consequences and repair

Cell cycle regulation of human DNA repair and chromatin remodeling genes

FunHoP analysis reveals upregulation of mitochondrial genes in prostate cancer

Microbial community and metagenome dynamics during biodegradation of dispersed oil reveals potential key-players in cold Norwegian seawater

Assessment of composite motif discovery methods

Detecting copy number variation in next generation sequencing data from diagnostic gene panels

EpiFactors: a comprehensive database of human epigenetic factors and complexes

The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding

Feature-based classification of human transcription factors into hypothetical sub-classes related to regulatory function

Isolation of Mutant Alginate Lyases with Cleavage Specificity for Di-guluronic Acid Linkages

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