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HIF1A Employs CDK8-Mediator to Stimulate RNAPII Elongation in Response to Hypoxia

Cell, 2013-06, Vol.153 (6), p.1327-1339

2013

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Foxc1 reinforces quiescence in self-renewing hair follicle stem cells

Science (American Association for the Advancement of Science), 2016-02, Vol.351 (6273), p.613-617

2016

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Internal and external normalization of nascent RNA sequencing run-on experiments

BMC bioinformatics, 2024-01, Vol.25 (1), p.19-19, Article 19

2024

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Just 2% of SARS-CoV-2-positive individuals carry 90% of the virus circulating in communities

Proceedings of the National Academy of Sciences - PNAS, 2021-05, Vol.118 (21), p.1

2021

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Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation

Nature immunology, 2018-09, Vol.19 (9), p.932

2018

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Nascent transcription upon interferon-α2 stimulation on human and rhesus macaque lymphoblastoid cell lines

BMC research notes, 2023-10, Vol.16 (1), p.292-292, Article 292

2023

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Identification of Mediator Kinase Substrates in Human Cells using Cortistatin A and Quantitative Phosphoproteomics

Cell reports (Cambridge), 2016-04, Vol.15 (2), p.436-450

2016

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Transcription factor binding variation in the evolution of gene regulation

Trends in genetics, 2010-11, Vol.26 (11), p.468-475

Dowell, Robin D

2010

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The Δ40p53 isoform inhibits p53-dependent eRNA transcription and enables regulation by signal-specific transcription factors during p53 activation

PLoS biology, 2021-08, Vol.19 (8), p.e3001364-e3001364

2021

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Transcription dosage compensation does not occur in Down syndrome

BMC biology, 2023-11, Vol.21 (1), p.228-228, Article 228

2023

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Detecting Differential Transcription Factor Activity from ATAC-Seq Data

Molecules (Basel, Switzerland), 2018-05, Vol.23 (5), p.1136

2018

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Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast

Proceedings of the National Academy of Sciences - PNAS, 2009-10, Vol.106 (43), p.18321-18326

2009

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Human TFIIH Kinase CDK7 Regulates Transcription-Associated Chromatin Modifications

Cell reports (Cambridge), 2017-08, Vol.20 (5), p.1173-1186

2017

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Protocol variations in run-on transcription dataset preparation produce detectable signatures in sequencing libraries

BMC genomics, 2022-03, Vol.23 (1), p.187-187, Article 187

2022

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Genotype to Phenotype: A Complex Problem

Science (American Association for the Advancement of Science), 2010-04, Vol.328 (5977), p.469-469

2010

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Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction

BMC bioinformatics, 2004-06, Vol.5 (1), p.71-71

2004

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Global analysis of p53-regulated transcription identifies its direct targets and unexpected regulatory mechanisms

eLife, 2014-05, Vol.3, p.e02200-e02200

2014

Volltextzugriff (PDF)

The temporal dynamics of lncRNA Firre-mediated epigenetic and transcriptional regulation

Nature communications, 2024-08, Vol.15 (1), p.6821-13, Article 6821

2024

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Tissue-specific transcriptional regulation has diverged significantly between human and mouse

Nature genetics, 2007-06, Vol.39 (6), p.730-732

2007

Volltextzugriff (PDF)

Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints

BMC bioinformatics, 2006-09, Vol.7 (1), p.400-400, Article 400

2006

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Combining signal and sequence to detect RNA polymerase initiation in ATAC-seq data

PloS one, 2020-04, Vol.15 (4), p.e0232332-e0232332

2020

Volltextzugriff (PDF)

Heat shock in C. elegans induces downstream of gene transcription and accumulation of double-stranded RNA

PloS one, 2019-04, Vol.14 (4), p.e0206715-e0206715

2019

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Genome-wide maps of polyadenylation reveal dynamic mRNA 3'-end formation in mammalian cell lineages

RNA (Cambridge), 2013-03, Vol.19 (3), p.413-425

2013

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An intronic LINE-1 regulates IFNAR1 expression in human immune cells

Mobile DNA, 2023-11, Vol.14 (1), p.20-20, Article 20

2023

Volltextzugriff (PDF)

Suppression of p53 response by targeting p53-Mediator binding with a stapled peptide

Cell reports (Cambridge), 2022-04, Vol.39 (1), p.110630-110630, Article 110630

2022

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HIF1A Employs CDK8-Mediator to Stimulate RNAPII Elongation in Response to Hypoxia

Foxc1 reinforces quiescence in self-renewing hair follicle stem cells

Internal and external normalization of nascent RNA sequencing run-on experiments

Just 2% of SARS-CoV-2-positive individuals carry 90% of the virus circulating in communities

Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation

Nascent transcription upon interferon-α2 stimulation on human and rhesus macaque lymphoblastoid cell lines

Identification of Mediator Kinase Substrates in Human Cells using Cortistatin A and Quantitative Phosphoproteomics

Transcription factor binding variation in the evolution of gene regulation

The Δ40p53 isoform inhibits p53-dependent eRNA transcription and enables regulation by signal-specific transcription factors during p53 activation

Transcription dosage compensation does not occur in Down syndrome

Detecting Differential Transcription Factor Activity from ATAC-Seq Data

Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast

Human TFIIH Kinase CDK7 Regulates Transcription-Associated Chromatin Modifications

Protocol variations in run-on transcription dataset preparation produce detectable signatures in sequencing libraries

Genotype to Phenotype: A Complex Problem

Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction

Global analysis of p53-regulated transcription identifies its direct targets and unexpected regulatory mechanisms

The temporal dynamics of lncRNA Firre-mediated epigenetic and transcriptional regulation

Tissue-specific transcriptional regulation has diverged significantly between human and mouse

Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints

Combining signal and sequence to detect RNA polymerase initiation in ATAC-seq data

Heat shock in C. elegans induces downstream of gene transcription and accumulation of double-stranded RNA

Genome-wide maps of polyadenylation reveal dynamic mRNA 3'-end formation in mammalian cell lineages

An intronic LINE-1 regulates IFNAR1 expression in human immune cells

Suppression of p53 response by targeting p53-Mediator binding with a stapled peptide

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