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Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1

Journal of Bacteriology, 2008-04, Vol.190 (8), p.2790-2803

2008

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More than just a gut feeling: constraint-based genome-scale metabolic models for predicting functions of human intestinal microbes

Microbiome, 2017-07, Vol.5 (1), p.78-78, Article 78

2017

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SyNDI: synchronous network data integration framework

BMC bioinformatics, 2018-11, Vol.19 (1), p.403-403, Article 403

2018

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Tailoring and optimizing fatty acid production by oleaginous yeasts through the systematic exploration of their physiological fitness

Microbial cell factories, 2022-11, Vol.21 (1), p.1-228, Article 228

2022

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Neochloris oleoabundans is worth its salt: Transcriptomic analysis under salt and nitrogen stress

PloS one, 2018-04, Vol.13 (4), p.e0194834-e0194834

2018

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Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential

BMC genomics, 2021-02, Vol.22 (1), p.102-21, Article 102

2021

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Exploring the associations between transcript levels and fluxes in constraint-based models of metabolism

BMC bioinformatics, 2021-11, Vol.22 (1), p.1-574, Article 574

2021

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The metabolic response of P. putida KT2442 producing high levels of polyhydroxyalkanoate under single- and multiple-nutrient-limited growth: highlights from a multi-level omics approach

Microbial cell factories, 2012-03, Vol.11 (1), p.34-34

2012

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From correlation to causation: analysis of metabolomics data using systems biology approaches

Metabolomics, 2018, Vol.14 (4), p.37-20, Article 37

2018

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Analysis of host-pathogen gene association networks reveals patient-specific response to streptococcal and polymicrobial necrotising soft tissue infections

BMC medicine, 2022-05, Vol.20 (1), p.173-173, Article 173

2022

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The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis

Environmental microbiology, 2016-10, Vol.18 (10), p.3403-3424

2016

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DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems

BMC systems biology, 2018-06, Vol.12 (1), p.72-72, Article 72

2018

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Understanding the antimicrobial mechanism of TiO₂-based nanocomposite films in a pathogenic bacterium

Scientific reports, 2014-02, Vol.4 (1), p.4134, Article 4134

2014

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Towards understanding Pseudomonas aeruginosa burn wound infections by profiling gene expression

Biotechnology letters, 2008-05, Vol.30 (5), p.777-790

2008

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Immunoglobulins drive terminal maturation of splenic dendritic cells

Proceedings of the National Academy of Sciences - PNAS, 2013-02, Vol.110 (6), p.2282-2287

2013

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Efficient Reconstruction of Predictive Consensus Metabolic Network Models

PLoS computational biology, 2016-08, Vol.12 (8), p.e1005085-e1005085

2016

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D-Lactic Acid Production from Sugarcane Bagasse by Genetically Engineered Saccharomyces cerevisiae

Journal of fungi (Basel), 2022-08, Vol.8 (8), p.816

2022

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Identification of Aspergillus niger Aquaporins Involved in Hydrogen Peroxide Signaling

Journal of fungi (Basel), 2023-04, Vol.9 (4), p.499

2023

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Predicting the murine enterocyte metabolic response to diets that differ in lipid and carbohydrate composition

Scientific reports, 2017-08, Vol.7 (1), p.8784-11, Article 8784

2017

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A genetic toolkit and gene switches to limit Mycoplasma growth for biosafety applications

Nature communications, 2022-04, Vol.13 (1), p.1910-1910, Article 1910

2022

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Integrated In Silico Analysis of Pathway Designs for Synthetic Photo-Electro-Autotrophy

PloS one, 2016-06, Vol.11 (6), p.e0157851-e0157851

2016

Volltextzugriff (PDF)

Use of Microarray Datasets to generate Caco-2-dedicated Networks and to identify Reporter Genes of Specific Pathway Activity

Scientific reports, 2017-07, Vol.7 (1), p.6778-12, Article 6778

2017

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Aspergillus niger citrate exporter revealed by comparison of two alternative citrate producing conditions

FEMS microbiology letters, 2019-04, Vol.366 (7), p.1

2019

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Pseudomonas putida KT2440 is HV1 certified, not GRAS

Microbial biotechnology, 2019-09, Vol.12 (5), p.845-848

2019

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Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View

PloS one, 2015-09, Vol.10 (9), p.e0137908-e0137908

2015

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Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1

More than just a gut feeling: constraint-based genome-scale metabolic models for predicting functions of human intestinal microbes

SyNDI: synchronous network data integration framework

Tailoring and optimizing fatty acid production by oleaginous yeasts through the systematic exploration of their physiological fitness

Neochloris oleoabundans is worth its salt: Transcriptomic analysis under salt and nitrogen stress

Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential

Exploring the associations between transcript levels and fluxes in constraint-based models of metabolism

The metabolic response of P. putida KT2442 producing high levels of polyhydroxyalkanoate under single- and multiple-nutrient-limited growth: highlights from a multi-level omics approach

From correlation to causation: analysis of metabolomics data using systems biology approaches

Analysis of host-pathogen gene association networks reveals patient-specific response to streptococcal and polymicrobial necrotising soft tissue infections

The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis

DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems

Understanding the antimicrobial mechanism of TiO₂-based nanocomposite films in a pathogenic bacterium

Towards understanding Pseudomonas aeruginosa burn wound infections by profiling gene expression

Immunoglobulins drive terminal maturation of splenic dendritic cells

Efficient Reconstruction of Predictive Consensus Metabolic Network Models

D-Lactic Acid Production from Sugarcane Bagasse by Genetically Engineered Saccharomyces cerevisiae

Identification of Aspergillus niger Aquaporins Involved in Hydrogen Peroxide Signaling

Predicting the murine enterocyte metabolic response to diets that differ in lipid and carbohydrate composition

A genetic toolkit and gene switches to limit Mycoplasma growth for biosafety applications

Integrated In Silico Analysis of Pathway Designs for Synthetic Photo-Electro-Autotrophy

Use of Microarray Datasets to generate Caco-2-dedicated Networks and to identify Reporter Genes of Specific Pathway Activity

Aspergillus niger citrate exporter revealed by comparison of two alternative citrate producing conditions

Pseudomonas putida KT2440 is HV1 certified, not GRAS

Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View

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