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Qualimap: evaluating next-generation sequencing alignment data

Bioinformatics (Oxford, England), 2012-10, Vol.28 (20), p.2678-2679

2012

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Global Transcriptome Analysis of Primary Cerebrocortical Cells: Identification of Genes Regulated by Triiodothyronine in Specific Cell Types

Cerebral cortex (New York, N.Y. 1991), 2017-01, Vol.27 (1), p.706-717

2017

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Functional Profiling of Soft Tissue Sarcoma Using Mechanistic Models

International journal of molecular sciences, 2023-09, Vol.24 (19), p.14732

2023

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Drug repurposing for COVID-19 using machine learning and mechanistic models of signal transduction circuits related to SARS-CoV-2 infection

Signal transduction and targeted therapy, 2020-12, Vol.5 (1), p.290-290, Article 290

2020

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PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes

Nucleic acids research, 2006-07, Vol.34 (Web Server issue), p.W621

2006

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BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments

Nucleic acids research, 2006-07, Vol.34 (Web Server issue), p.W472

2006

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A comprehensive database for integrated analysis of omics data in autoimmune diseases

BMC bioinformatics, 2021-06, Vol.22 (1), p.343-14, Article 343

2021

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Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing

BMC genomics, 2011-05, Vol.12 (1), p.259-259, Article 259

2011

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Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia

Fungal genetics and biology, 2014-04, Vol.65, p.69-80

2014

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Real-world evidence with a retrospective cohort of 15,968 COVID-19 hospitalized patients suggests 21 new effective treatments

Virology journal, 2023-10, Vol.20 (1), p.1-226, Article 226

2023

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Controlled Ovarian Stimulation Induces a Functional Genomic Delay of the Endometrium with Potential Clinical Implications

The journal of clinical endocrinology and metabolism, 2008-11, Vol.93 (11), p.4500-4510

2008

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Improving the management of Inherited Retinal Dystrophies by targeted sequencing of a population-specific gene panel

Scientific reports, 2016-04, Vol.6 (1), p.23910-23910, Article 23910

2016

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Protein and functional isoform levels and genetic variants of the BAFF and APRIL pathway components in systemic lupus erythematosus

Scientific reports, 2022-07, Vol.12 (1), p.11219-11219, Article 11219

2022

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Models of cell signaling uncover molecular mechanisms of high-risk neuroblastoma and predict disease outcome

Biology direct, 2018-08, Vol.13 (1), p.16-16, Article 16

2018

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267 Spanish Exomes Reveal Population-Specific Differences in Disease-Related Genetic Variation

Molecular biology and evolution, 2016-05, Vol.33 (5), p.1205-1218

2016

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BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments

Nucleic acids research, 2005-07, Vol.33 (Web Server issue), p.W460

2005

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Differential expression in RNA-seq: a matter of depth

Genome research, 2011-12, Vol.21 (12), p.2213

2011

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From genes to functional classes in the study of biological systems

BMC bioinformatics, 2007-04, Vol.8 (1), p.114-114, Article 114

2007

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Exploring sunflower responses to Sclerotinia head rot at early stages of infection using RNA-seq analysis

Scientific reports, 2020-08, Vol.10 (1), p.13347-13347, Article 13347

2020

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Endoglin and MMP14 Contribute to Ewing Sarcoma Spreading by Modulation of Cell–Matrix Interactions

International journal of molecular sciences, 2022-08, Vol.23 (15), p.8657

2022

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Mutations in the MORC2 gene cause axonal Charcot-Marie-Tooth disease

Brain (London, England : 1878), 2016-01, Vol.139 (Pt 1), p.62-72

2016

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drexml: A command line tool and Python package for drug repurposing

Computational and structural biotechnology journal, 2024-12, Vol.23, p.1129-1143

2024

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ETE: a python Environment for Tree Exploration

BMC bioinformatics, 2010-01, Vol.11 (1), p.24-24, Article 24

2010

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Early Transcriptional Defense Responses in Arabidopsis Cell Suspension Culture under High-Light Conditions

Plant physiology (Bethesda), 2011-07, Vol.156 (3), p.1439-1456

2011

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Detection of High Level of Co-Infection and the Emergence of Novel SARS CoV-2 Delta-Omicron and Omicron-Omicron Recombinants in the Epidemiological Surveillance of Andalusia

International journal of molecular sciences, 2023-01, Vol.24 (3), p.2419

2023

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Qualimap: evaluating next-generation sequencing alignment data

Global Transcriptome Analysis of Primary Cerebrocortical Cells: Identification of Genes Regulated by Triiodothyronine in Specific Cell Types

Functional Profiling of Soft Tissue Sarcoma Using Mechanistic Models

Drug repurposing for COVID-19 using machine learning and mechanistic models of signal transduction circuits related to SARS-CoV-2 infection

PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments

A comprehensive database for integrated analysis of omics data in autoimmune diseases

Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing

Sequencing and functional analysis of the genome of a nematode egg-parasitic fungus, Pochonia chlamydosporia

Real-world evidence with a retrospective cohort of 15,968 COVID-19 hospitalized patients suggests 21 new effective treatments

Controlled Ovarian Stimulation Induces a Functional Genomic Delay of the Endometrium with Potential Clinical Implications

Improving the management of Inherited Retinal Dystrophies by targeted sequencing of a population-specific gene panel

Protein and functional isoform levels and genetic variants of the BAFF and APRIL pathway components in systemic lupus erythematosus

Models of cell signaling uncover molecular mechanisms of high-risk neuroblastoma and predict disease outcome

267 Spanish Exomes Reveal Population-Specific Differences in Disease-Related Genetic Variation

BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments

Differential expression in RNA-seq: a matter of depth

From genes to functional classes in the study of biological systems

Exploring sunflower responses to Sclerotinia head rot at early stages of infection using RNA-seq analysis

Endoglin and MMP14 Contribute to Ewing Sarcoma Spreading by Modulation of Cell–Matrix Interactions

Mutations in the MORC2 gene cause axonal Charcot-Marie-Tooth disease

drexml: A command line tool and Python package for drug repurposing

ETE: a python Environment for Tree Exploration

Early Transcriptional Defense Responses in Arabidopsis Cell Suspension Culture under High-Light Conditions

Detection of High Level of Co-Infection and the Emergence of Novel SARS CoV-2 Delta-Omicron and Omicron-Omicron Recombinants in the Epidemiological Surveillance of Andalusia

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