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Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data

Journal of proteome research, 2019-02, Vol.18 (2), p.623-632

2019

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The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest

Nucleic acids research, 2023-01, Vol.51 (D1), p.D638-D646

2023

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The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets

Nucleic acids research, 2021-01, Vol.49 (D1), p.D605-D612

2021

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The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible

Nucleic acids research, 2017-01, Vol.45 (D1), p.D362-D368

2017

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Topological analysis and interactive visualization of biological networks and protein structures

Nature protocols, 2012-04, Vol.7 (4), p.670-685

2012

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Analyzing and visualizing residue networks of protein structures

Trends in biochemical sciences (Amsterdam. Regular ed.), 2011-04, Vol.36 (4), p.179-182

2011

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Visualize omics data on networks with Omics Visualizer, a Cytoscape App [version 1; peer review: 2 approved]

F1000 research, 2020, Vol.9, p.157

2020

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Streamlined analysis of drug targets by proteome integral solubility alteration indicates organ-specific engagement

Nature communications, 2024-10, Vol.15 (1), p.8923-17, Article 8923

2024

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Differentially Expressed miRNAs in Ulcerative Colitis and Crohn’s Disease

Frontiers in immunology, 2022-06, Vol.13, p.865777-865777

2022

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The transcriptomic landscape of neurons carrying PSEN1 mutations reveals changes in extracellular matrix components and non-coding gene expression

Neurobiology of disease, 2023-03, Vol.178, p.105980, Article 105980

2023

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NetworkPrioritizer: a versatile tool for network-based prioritization of candidate disease genes or other molecules

Bioinformatics, 2013-06, Vol.29 (11), p.1471-1473

2013

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Consistent Prediction of Mutation Effect on Drug Binding in HIV‑1 Protease Using Alchemical Calculations

Journal of chemical theory and computation, 2018-07, Vol.14 (7), p.3397-3408

2018

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Profiling of Parkin-binding partners using tandem affinity purification

PloS one, 2013-11, Vol.8 (11), p.e78648-e78648

2013

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Golgi fragmentation - One of the earliest organelle phenotypes in Alzheimer's disease neurons

Frontiers in neuroscience, 2023-02, Vol.17, p.1120086-1120086

2023

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Non-active site mutants of HIV-1 protease influence resistance and sensitisation towards protease inhibitors

Retrovirology, 2020-05, Vol.17 (1), p.13-14, Article 13

2020

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The impact of PrsA over-expression on the Bacillus subtilis transcriptome during fed-batch fermentation of alpha-amylase production

Frontiers in microbiology, 2022-08, Vol.13, p.909493

2022

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Near-Neighbor Interactions in the NS3-4A Protease of HCV Impact Replicative Fitness of Drug-Resistant Viral Variants

Journal of molecular biology, 2019-05, Vol.431 (12), p.2354-2368

2019

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STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

Nucleic acids research, 2019-01, Vol.47 (D1), p.D607-D613

2019

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Abundant genetic overlap between blood lipids and immune-mediated diseases indicates shared molecular genetic mechanisms

PloS one, 2015-04, Vol.10 (4), p.e0123057-e0123057

2015

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Cross-species high-resolution transcriptome profiling suggests biomarkers and therapeutic targets for ulcerative colitis

Frontiers in molecular biosciences, 2023-01, Vol.9, p.1081176-1081176

2023

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Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks

Journal of proteome research, 2023-02, Vol.22 (2), p.637-646

2023

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Visualize omics data on networks with Omics Visualizer, a Cytoscape App [version 2; peer review: 2 approved]

F1000 research, 2020-01, Vol.9, p.157-157

2020

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Correction: Abundant Genetic Overlap between Blood Lipids and Immune-Mediated Diseases Indicates Shared Molecular Genetic Mechanisms

PloS one, 2015-05, Vol.10 (5), p.e0128048-e0128048

2015

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Human pathways in animal models: possibilities and limitations

Nucleic acids research, 2021-02, Vol.49 (4), p.1859-1871

2021

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A quantitative and site-specific atlas of the citrullinome reveals widespread existence of citrullination and insights into PADI4 substrates

Nature structural & molecular biology, 2024-06, Vol.31 (6), p.977

2024

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Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data

The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest

The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible

Topological analysis and interactive visualization of biological networks and protein structures

Analyzing and visualizing residue networks of protein structures

Visualize omics data on networks with Omics Visualizer, a Cytoscape App [version 1; peer review: 2 approved]

Streamlined analysis of drug targets by proteome integral solubility alteration indicates organ-specific engagement

Differentially Expressed miRNAs in Ulcerative Colitis and Crohn’s Disease

The transcriptomic landscape of neurons carrying PSEN1 mutations reveals changes in extracellular matrix components and non-coding gene expression

NetworkPrioritizer: a versatile tool for network-based prioritization of candidate disease genes or other molecules

Consistent Prediction of Mutation Effect on Drug Binding in HIV‑1 Protease Using Alchemical Calculations

Profiling of Parkin-binding partners using tandem affinity purification

Golgi fragmentation - One of the earliest organelle phenotypes in Alzheimer's disease neurons

Non-active site mutants of HIV-1 protease influence resistance and sensitisation towards protease inhibitors

The impact of PrsA over-expression on the Bacillus subtilis transcriptome during fed-batch fermentation of alpha-amylase production

Near-Neighbor Interactions in the NS3-4A Protease of HCV Impact Replicative Fitness of Drug-Resistant Viral Variants

STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

Abundant genetic overlap between blood lipids and immune-mediated diseases indicates shared molecular genetic mechanisms

Cross-species high-resolution transcriptome profiling suggests biomarkers and therapeutic targets for ulcerative colitis

Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks

Visualize omics data on networks with Omics Visualizer, a Cytoscape App [version 2; peer review: 2 approved]

Correction: Abundant Genetic Overlap between Blood Lipids and Immune-Mediated Diseases Indicates Shared Molecular Genetic Mechanisms

Human pathways in animal models: possibilities and limitations

A quantitative and site-specific atlas of the citrullinome reveals widespread existence of citrullination and insights into PADI4 substrates

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