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Predicting RNA-protein interactions using only sequence information

BMC bioinformatics, 2011-12, Vol.12 (1), p.489-489, Article 489

2011

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Computational prediction of protein interfaces: A review of data driven methods

FEBS letters, 2015-11, Vol.589 (23), p.3516-3526

2015

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HomPPI: a class of sequence homology based protein-protein interface prediction methods

BMC bioinformatics, 2011-06, Vol.12 (1), p.244-244, Article 244

2011

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Predicting linear B-cell epitopes using string kernels

Journal of molecular recognition, 2008-07, Vol.21 (4), p.243-255

2008

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Predicting protein-protein interface residues using local surface structural similarity

BMC bioinformatics, 2012-03, Vol.13 (1), p.41-41, Article 41

2012

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RNABindRPlus: a predictor that combines machine learning and sequence homology-based methods to improve the reliability of predicted RNA-binding residues in proteins

PloS one, 2014-05, Vol.9 (5), p.e97725

2014

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Glycosylation site prediction using ensembles of Support Vector Machine classifiers

BMC bioinformatics, 2007-11, Vol.8 (1), p.438-438, Article 438

2007

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High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases

Proceedings of the National Academy of Sciences - PNAS, 2010-06, Vol.107 (26), p.12028-12033

2010

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Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art

BMC bioinformatics, 2012-05, Vol.13 (1), p.89-89, Article 89

2012

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GeneWeld: Efficient Targeted Integration Directed by Short Homology in Zebrafish

Bio-protocol, 2021-07, Vol.11 (14), p.e4100-e4100

2021

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Robust activation of microhomology-mediated end joining for precision gene editing applications

PLoS genetics, 2018-09, Vol.14 (9), p.e1007652

2018

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Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA)

Nature methods, 2011-01, Vol.8 (1), p.67-69

2011

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Predicting DNA-binding sites of proteins from amino acid sequence

BMC bioinformatics, 2006-05, Vol.7 (1), p.262-262, Article 262

2006

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A Plasmodium-like virulence effector of the soybean cyst nematode suppresses plant innate immunity

The New phytologist, 2016-10, Vol.212 (2), p.444-460

2016

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Prediction of RNA binding sites in proteins from amino acid sequence

RNA (Cambridge), 2006-08, Vol.12 (8), p.1450-1462

2006

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On evaluating MHC-II binding peptide prediction methods

PloS one, 2008-09, Vol.3 (9), p.e3268-e3268

2008

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Characterization of Protein–Protein Interfaces

The Protein Journal, 2008-01, Vol.27 (1), p.59-70

2008

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Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly

Nature protocols, 2006-11, Vol.1 (4), p.1637-1652

2006

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Expanding the CRISPR Toolbox with ErCas12a in Zebrafish and Human Cells

CRISPR journal, 2019-12, Vol.2 (6), p.417-433

2019

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DockRank: Ranking docked conformations using partner-specific sequence homology-based protein interface prediction

Proteins, structure, function, and bioinformatics, 2014-02, Vol.82 (2), p.250-267

2014

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Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization step

Proceedings of the National Academy of Sciences - PNAS, 2011-06, Vol.108 (23), p.9443-9448

2011

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A Proteomic Analysis of Maize Chloroplast Biogenesis

Plant physiology (Bethesda), 2004-02, Vol.134 (2), p.560-574

2004

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Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach

BMC bioinformatics, 2007-08, Vol.8 (1), p.284-284, Article 284

2007

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Predicting RNA-protein interactions using only sequence information

Computational prediction of protein interfaces: A review of data driven methods

HomPPI: a class of sequence homology based protein-protein interface prediction methods

Efficient targeted integration directed by short homology in zebrafish and mammalian cells

Predicting linear B-cell epitopes using string kernels

Predicting protein-protein interface residues using local surface structural similarity

RNABindRPlus: a predictor that combines machine learning and sequence homology-based methods to improve the reliability of predicted RNA-binding residues in proteins

Glycosylation site prediction using ensembles of Support Vector Machine classifiers

High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases

Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art

GeneWeld: Efficient Targeted Integration Directed by Short Homology in Zebrafish

Robust activation of microhomology-mediated end joining for precision gene editing applications

Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA)

Rapid “Open-Source” Engineering of Customized Zinc-Finger Nucleases for Highly Efficient Gene Modification

Predicting DNA-binding sites of proteins from amino acid sequence

A Plasmodium-like virulence effector of the soybean cyst nematode suppresses plant innate immunity

Prediction of RNA binding sites in proteins from amino acid sequence

On evaluating MHC-II binding peptide prediction methods

Characterization of Protein–Protein Interfaces

Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly

Expanding the CRISPR Toolbox with ErCas12a in Zebrafish and Human Cells

DockRank: Ranking docked conformations using partner-specific sequence homology-based protein interface prediction

Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization step

A Proteomic Analysis of Maize Chloroplast Biogenesis

Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach

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