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Sequence artifacts in DNA from formalin-fixed tissues: causes and strategies for minimization

Clinical chemistry (Baltimore, Md.), 2015-01, Vol.61 (1), p.64-71

2015

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Combination Osimertinib and Gefitinib in C797S and T790M EGFR-Mutated Non–Small Cell Lung Cancer

Journal of thoracic oncology, 2017-11, Vol.12 (11), p.1728-1732

2017

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GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly

Genome research, 2017-12, Vol.27 (12), p.2050-2060

2017

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A reference collection of patient-derived cell line and xenograft models of proneural, classical and mesenchymal glioblastoma

Scientific reports, 2019-03, Vol.9 (1), p.4902-4902, Article 4902

2019

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DNA methylation biomarkers in cancer: progress towards clinical implementation

Expert review of molecular diagnostics, 2012-06, Vol.12 (5), p.473-487

2012

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Reducing sequence artifacts in amplicon-based massively parallel sequencing of formalin-fixed paraffin-embedded DNA by enzymatic depletion of uracil-containing templates

Clinical chemistry (Baltimore, Md.), 2013-09, Vol.59 (9), p.1376-1383

2013

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High resolution melting analysis for rapid and sensitive EGFR and KRAS mutation detection in formalin fixed paraffin embedded biopsies

BMC cancer, 2008-05, Vol.8 (1), p.142-142, Article 142

2008

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Targeted-capture massively-parallel sequencing enables robust detection of clinically informative mutations from formalin-fixed tumours

Scientific reports, 2013-12, Vol.3 (1), p.3494, Article 3494

2013

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Probe-Free Digital PCR Quantitative Methodology to Measure Donor-Specific Cell-Free DNA after Solid-Organ Transplantation

Clinical chemistry (Baltimore, Md.), 2017-03, Vol.63 (3), p.742-750

2017

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Limited copy number-high resolution melting (LCN-HRM) enables the detection and identification by sequencing of low level mutations in cancer biopsies

Molecular cancer, 2009-10, Vol.8 (1), p.82-82

2009

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Reducing Artifactual EGFR T790M Mutations in DNA from Formalin-Fixed Paraffin-Embedded Tissue by Use of Thymine-DNA Glycosylase

Clinical chemistry (Baltimore, Md.), 2017-09, Vol.63 (9), p.1506-1514

2017

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Differential mechanisms of CDKN2A (p16) alteration in oral tongue squamous cell carcinomas and correlation with patient outcome

International journal of cancer, 2014-08, Vol.135 (4), p.887-895

2014

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Dramatic reduction of sequence artefacts from DNA isolated from formalin-fixed cancer biopsies by treatment with uracil- DNA glycosylase

Oncotarget, 2012-05, Vol.3 (5), p.546-558

2012

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HER3 and downstream pathways are involved in colonization of brain metastases from breast cancer

Breast cancer research : BCR, 2010-01, Vol.12 (4), p.R46-R46, Article R46

2010

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Publisher Correction: A reference collection of patient-derived cell line and xenograft models of proneural, classical and mesenchymal glioblastoma

Scientific reports, 2020-01, Vol.10 (1), p.1185-1185, Article 1185

2020

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Sensitive quantitative detection of somatic mosaic mutation in “double cortex” syndrome

Epileptic disorders, 2017-12, Vol.19 (4), p.450-455

2017

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A multisite blinded study for the detection of BRAF mutations in formalin-fixed, paraffin-embedded malignant melanoma

Scientific reports, 2013-04, Vol.3 (1), p.1659-1659, Article 1659

2013

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Rarity of AKT1 and AKT3 E17K mutations in squamous cell carcinoma of lung

Cell cycle (Georgetown, Tex.), 2010-11, Vol.9 (21), p.4411-4412

2010

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Integrated mutation, copy number and expression profiling in resectable non-small cell lung cancer

BMC cancer, 2011-03, Vol.11 (1), p.93-93, Article 93

2011

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Detection of the transforming AKT1 mutation E17K in non-small cell lung cancer by high resolution melting

BMC research notes, 2008-05, Vol.1 (1), p.14-14, Article 14

2008

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Abstract 2098: Reducing sequence artefacts from FFPE DNA for cancer diagnostics

Cancer research (Chicago, Ill.), 2012-04, Vol.72 (8_Supplement), p.2098-2098

2012

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Temporal changes of EGFR mutations and T790M levels in tumour and plasma DNA following AZD9291 treatment

Lung cancer (Amsterdam, Netherlands), 2016-08, Vol.98, p.29-32

2016

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Abstract 823: A case-control study of constitutional BRCA1 methylation in a mammographically screened cohort

Cancer research (Chicago, Ill.), 2019-07, Vol.79 (13_Supplement), p.823-823

2019

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Abstract 383: Is loss of MGMT a therapeutic target in lung cancer

Cancer research (Chicago, Ill.), 2014-10, Vol.74 (19_Supplement), p.383-383

2014

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In Reply to Leone

Journal of thoracic oncology, 2018-02, Vol.13 (2), p.e22-e23

2018

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Sequence artifacts in DNA from formalin-fixed tissues: causes and strategies for minimization

Combination Osimertinib and Gefitinib in C797S and T790M EGFR-Mutated Non–Small Cell Lung Cancer

GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly

A reference collection of patient-derived cell line and xenograft models of proneural, classical and mesenchymal glioblastoma

DNA methylation biomarkers in cancer: progress towards clinical implementation

Reducing sequence artifacts in amplicon-based massively parallel sequencing of formalin-fixed paraffin-embedded DNA by enzymatic depletion of uracil-containing templates

High resolution melting analysis for rapid and sensitive EGFR and KRAS mutation detection in formalin fixed paraffin embedded biopsies

Targeted-capture massively-parallel sequencing enables robust detection of clinically informative mutations from formalin-fixed tumours

Probe-Free Digital PCR Quantitative Methodology to Measure Donor-Specific Cell-Free DNA after Solid-Organ Transplantation

Limited copy number-high resolution melting (LCN-HRM) enables the detection and identification by sequencing of low level mutations in cancer biopsies

Reducing Artifactual EGFR T790M Mutations in DNA from Formalin-Fixed Paraffin-Embedded Tissue by Use of Thymine-DNA Glycosylase

Differential mechanisms of CDKN2A (p16) alteration in oral tongue squamous cell carcinomas and correlation with patient outcome

Dramatic reduction of sequence artefacts from DNA isolated from formalin-fixed cancer biopsies by treatment with uracil- DNA glycosylase

HER3 and downstream pathways are involved in colonization of brain metastases from breast cancer

Publisher Correction: A reference collection of patient-derived cell line and xenograft models of proneural, classical and mesenchymal glioblastoma

Sensitive quantitative detection of somatic mosaic mutation in “double cortex” syndrome

A multisite blinded study for the detection of BRAF mutations in formalin-fixed, paraffin-embedded malignant melanoma

Rarity of AKT1 and AKT3 E17K mutations in squamous cell carcinoma of lung

Integrated mutation, copy number and expression profiling in resectable non-small cell lung cancer

Detection of the transforming AKT1 mutation E17K in non-small cell lung cancer by high resolution melting

Abstract 2098: Reducing sequence artefacts from FFPE DNA for cancer diagnostics

Temporal changes of EGFR mutations and T790M levels in tumour and plasma DNA following AZD9291 treatment

Abstract 823: A case-control study of constitutional BRCA1 methylation in a mammographically screened cohort

Abstract 383: Is loss of MGMT a therapeutic target in lung cancer

In Reply to Leone

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