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Single-cell replication profiling to measure stochastic variation in mammalian replication timing

Nature communications, 2018-01, Vol.9 (1), p.427-8, Article 427

2018

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Neuronal enhancers get a break

Neuron (Cambridge, Mass.), 2021-06, Vol.109 (11), p.1766-1768

2021

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Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble

Nature neuroscience, 2020-12, Vol.23 (12), p.1606

2020

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Topologically associating domains are stable units of replication-timing regulation

Nature (London), 2014-11, Vol.515 (7527), p.402-405

2014

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High-throughput single-cell epigenomic profiling by targeted insertion of promoters (TIP-seq)

The Journal of cell biology, 2021-12, Vol.220 (12), p.1

2021

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Nuclear Architecture Organized by Rif1 Underpins the Replication-Timing Program

Molecular cell, 2016-01, Vol.61 (2), p.260-273

2016

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Epigenomic dissection of Alzheimer’s disease pinpoints causal variants and reveals epigenome erosion

Cell, 2023-09, Vol.186 (20), p.4422-4437.e21

2023

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iPSC‐derived microglia carrying the TREM2 R47H/+ mutation are proinflammatory and promote synapse loss

Glia, 2024-02, Vol.72 (2), p.452-469

2024

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Large-Scale Chromatin Structure-Function Relationships during the Cell Cycle and Development: Insights from Replication Timing

Cold Spring Harbor Symposia on Quantitative Biology, 2015-01, Vol.80, p.53-63

2015

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Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding

Proceedings of the National Academy of Sciences - PNAS, 2012-07, Vol.109 (31), p.12574-12579

2012

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Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment

Stem cell reports, 2019-07, Vol.13 (1), p.193-206

2019

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Three-dimensional chromatin organization in brain function and dysfunction

Current opinion in neurobiology, 2021-08, Vol.69, p.214-221

2021

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Murine esBAF chromatin remodeling complex subunits BAF250a and Brg1 are necessary to maintain and reprogram pluripotency-specific replication timing of select replication domains

Epigenetics & chromatin, 2013-12, Vol.6 (1), p.42-42, Article 42

2013

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Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program

Genome research, 2015-08, Vol.25 (8), p.1104

2015

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Neuronal DNA double-strand breaks lead to genome structural variations and 3D genome disruption in neurodegeneration

Cell, 2023-09, Vol.186 (20), p.4404-4421.e20

2023

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Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication

Cell, 2019-02, Vol.176 (4), p.816-830.e18

2019

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Down-syndrome-induced senescence disrupts the nuclear architecture of neural progenitors

Cell stem cell, 2022-01, Vol.29 (1), p.116-130.e7

2022

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An integrative ENCODE resource for cancer genomics

Nature communications, 2020-07, Vol.11 (1), p.3696-11, Article 3696

2020

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Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells

The EMBO journal, 2012-09, Vol.31 (18), p.3678-3690

2012

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Mapping Replication Timing in Single Mammalian Cells

Current protocols, 2022-01, Vol.2 (1), p.e334-n/a

2022

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Neurons burdened by DNA double-strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration

Science advances, 2022-09, Vol.8 (39), p.eabo4662-eabo4662

2022

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Replication Timing Regulation and Chromatin Structure Dynamics During the Cell Cycle and Development

Dileep, Vishnu

2017

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Genome-wide analysis of replication timing in mammalian cells: Troubleshooting problems encountered when comparing different cell types

Methods (San Diego, Calif.), 2012-06, Vol.57 (2), p.165-169

2012

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Identifying cis elements for spatio-temporal control of mammalian DNA replication

Cell, 2018-12, Vol.176 (4), p.816-830.e18

2018

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Single-cell replication profiling to measure stochastic variation in mammalian replication timing

Neuronal enhancers get a break

Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble

Integrative detection and analysis of structural variation in cancer genomes

Topologically associating domains are stable units of replication-timing regulation

High-throughput single-cell epigenomic profiling by targeted insertion of promoters (TIP-seq)

Nuclear Architecture Organized by Rif1 Underpins the Replication-Timing Program

Epigenomic dissection of Alzheimer’s disease pinpoints causal variants and reveals epigenome erosion

iPSC‐derived microglia carrying the TREM2 R47H/+ mutation are proinflammatory and promote synapse loss

Large-Scale Chromatin Structure-Function Relationships during the Cell Cycle and Development: Insights from Replication Timing

Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding

Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment

Three-dimensional chromatin organization in brain function and dysfunction

Murine esBAF chromatin remodeling complex subunits BAF250a and Brg1 are necessary to maintain and reprogram pluripotency-specific replication timing of select replication domains

Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program

Neuronal DNA double-strand breaks lead to genome structural variations and 3D genome disruption in neurodegeneration

Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication

Down-syndrome-induced senescence disrupts the nuclear architecture of neural progenitors

An integrative ENCODE resource for cancer genomics

Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells

Mapping Replication Timing in Single Mammalian Cells

Neurons burdened by DNA double-strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration

Replication Timing Regulation and Chromatin Structure Dynamics During the Cell Cycle and Development

Genome-wide analysis of replication timing in mammalian cells: Troubleshooting problems encountered when comparing different cell types

Identifying cis elements for spatio-temporal control of mammalian DNA replication

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