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Identification of Platform-Independent Diagnostic Biomarker Panel for Hepatocellular Carcinoma Using Large-Scale Transcriptomics Data

Frontiers in genetics, 2020-01, Vol.10, p.1306-1306

2020

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Prediction of celiac disease associated epitopes and motifs in a protein

Frontiers in immunology, 2023-01, Vol.14, p.1056101-1056101

2023

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B3Pred: A Random-Forest-Based Method for Predicting and Designing Blood–Brain Barrier Penetrating Peptides

Pharmaceutics, 2021-08, Vol.13 (8), p.1237

2021

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An ensemble method for prediction of phage-based therapy against bacterial infections

Frontiers in microbiology, 2023-03, Vol.14, p.1148579-1148579

2023

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Computing Skin Cutaneous Melanoma Outcome From the HLA-Alleles and Clinical Characteristics

Frontiers in genetics, 2020-03, Vol.11, p.221-221

2020

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AntiBP3: A Method for Predicting Antibacterial Peptides against Gram-Positive/Negative/Variable Bacteria

Antibiotics (Basel), 2024-02, Vol.13 (2), p.168

2024

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A hybrid approach for predicting transcription factors

Frontiers in bioinformatics, 2024-07, Vol.4, p.1425419

2024

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A deep learning method for classification of HNSCC and HPV patients using single-cell transcriptomics

Frontiers in molecular biosciences, 2024-05, Vol.11, p.1395721

2024

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SIRT1 Prevents R-Loops during Chronological Aging by Modulating DNA Replication at rDNA Loci

Cells (Basel, Switzerland), 2023-11, Vol.12 (22), p.2630

2023

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AlgPred 2.0: an improved method for predicting allergenic proteins and mapping of IgE epitopes

Briefings in bioinformatics, 2021-07, Vol.22 (4)

2021

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HLA-DR4Pred2: An improved method for predicting HLA-DRB104:01 binders

Methods (San Diego, Calif.), 2024-12, Vol.232, p.18-28

2024

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Computer-aided prediction and design of IL-6 inducing peptides: IL-6 plays a crucial role in COVID-19

Briefings in bioinformatics, 2021-03, Vol.22 (2), p.936-945

2021

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Prediction and Analysis of Skin Cancer Progression using Genomics Profiles of Patients

Scientific reports, 2019-10, Vol.9 (1), p.15790-16, Article 15790

2019

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In silico method for predicting infectious strains of influenza A virus from its genome and protein sequences

Journal of general virology, 2022-11, Vol.103 (11)

2022

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A deep learning-based method for the prediction of DNA interacting residues in a protein

Briefings in bioinformatics, 2022-09, Vol.23 (5)

2022

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Pfeature: A Tool for Computing Wide Range of Protein Features and Building Prediction Models

Journal of computational biology, 2023-02, Vol.30 (2), p.204-222

2023

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HLAncPred: a method for predicting promiscuous non-classical HLA binding sites

Briefings in bioinformatics, 2022-09, Vol.23 (5)

2022

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A Web-Based Method for the Identification of IL6-Based Immunotoxicity in Vaccine Candidates

Methods in molecular biology (Clifton, N.J.), 2023, Vol.2673, p.317

2023

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In Silico Tool for Identification, Designing, and Searching of IL13-Inducing Peptides in Antigens

Methods in molecular biology (Clifton, N.J.), 2023, Vol.2673, p.329

2023

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NAGbinder: An approach for identifying N‐acetylglucosamine interacting residues of a protein from its primary sequence

Protein science, 2020-01, Vol.29 (1), p.201-210

2020

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ChAlPred: A web server for prediction of allergenicity of chemical compounds

Computers in biology and medicine, 2021-09, Vol.136, p.104746-104746, Article 104746

2021

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SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Computers in biology and medicine, 2021-06, Vol.133, p.104391, Article 104391

2021

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Prediction of RNA-interacting residues in a protein using CNN and evolutionary profile

Briefings in bioinformatics, 2023-01, Vol.24 (1)

2023

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IL13Pred: A method for predicting immunoregulatory cytokine IL-13 inducing peptides

Computers in biology and medicine, 2022-04, Vol.143, p.105297, Article 105297

2022

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Risk assessment of cancer patients based on HLA-I alleles, neobinders and expression of cytokines

Computers in biology and medicine, 2023-12, Vol.167, p.107594-107594, Article 107594

2023

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Identification of Platform-Independent Diagnostic Biomarker Panel for Hepatocellular Carcinoma Using Large-Scale Transcriptomics Data

Prediction of celiac disease associated epitopes and motifs in a protein

B3Pred: A Random-Forest-Based Method for Predicting and Designing Blood–Brain Barrier Penetrating Peptides

An ensemble method for prediction of phage-based therapy against bacterial infections

Computing Skin Cutaneous Melanoma Outcome From the HLA-Alleles and Clinical Characteristics

AntiBP3: A Method for Predicting Antibacterial Peptides against Gram-Positive/Negative/Variable Bacteria

A hybrid approach for predicting transcription factors

A deep learning method for classification of HNSCC and HPV patients using single-cell transcriptomics

SIRT1 Prevents R-Loops during Chronological Aging by Modulating DNA Replication at rDNA Loci

AlgPred 2.0: an improved method for predicting allergenic proteins and mapping of IgE epitopes

HLA-DR4Pred2: An improved method for predicting HLA-DRB104:01 binders

Computer-aided prediction and design of IL-6 inducing peptides: IL-6 plays a crucial role in COVID-19

Prediction and Analysis of Skin Cancer Progression using Genomics Profiles of Patients

In silico method for predicting infectious strains of influenza A virus from its genome and protein sequences

A deep learning-based method for the prediction of DNA interacting residues in a protein

Pfeature: A Tool for Computing Wide Range of Protein Features and Building Prediction Models

HLAncPred: a method for predicting promiscuous non-classical HLA binding sites

A Web-Based Method for the Identification of IL6-Based Immunotoxicity in Vaccine Candidates

In Silico Tool for Identification, Designing, and Searching of IL13-Inducing Peptides in Antigens

NAGbinder: An approach for identifying N‐acetylglucosamine interacting residues of a protein from its primary sequence

ChAlPred: A web server for prediction of allergenicity of chemical compounds

SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Prediction of RNA-interacting residues in a protein using CNN and evolutionary profile

IL13Pred: A method for predicting immunoregulatory cytokine IL-13 inducing peptides

Risk assessment of cancer patients based on HLA-I alleles, neobinders and expression of cytokines

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