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Visualizing the structure of RNA-seq expression data using grade of membership models

PLoS genetics, 2017-03, Vol.13 (3), p.e1006599-e1006599

2017

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Combining SNP-to-gene linking strategies to identify disease genes and assess disease omnigenicity

Nature genetics, 2022-06, Vol.54 (6), p.827-836

2022

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Improving the trans-ancestry portability of polygenic risk scores by prioritizing variants in predicted cell-type-specific regulatory elements

Nature genetics, 2020-12, Vol.52 (12), p.1346-1354

2020

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Polygenic architecture of rare coding variation across 394,783 exomes

Nature (London), 2023-02, Vol.614 (7948), p.492-499

2023

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A new sequence logo plot to highlight enrichment and depletion

BMC bioinformatics, 2018-12, Vol.19 (1), p.473-473, Article 473

2018

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Regional influences on community structure across the tropical-temperate divide

Nature communications, 2019-06, Vol.10 (1), p.2646-8, Article 2646

2019

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SAIGE-GENE+ improves the efficiency and accuracy of set-based rare variant association tests

Nature genetics, 2022-10, Vol.54 (10), p.1466-1469

2022

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Identifying disease-critical cell types and cellular processes by integrating single-cell RNA-sequencing and human genetics

Nature genetics, 2022-10, Vol.54 (10), p.1479-1492

2022

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Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data

Nature genetics, 2022-10, Vol.54 (10), p.1572-1580

2022

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Single-cell multi-ome regression models identify functional and disease-associated enhancers and enable chromatin potential analysis

Nature genetics, 2024-04, Vol.56 (4), p.627-636

2024

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Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

Genome research, 2020-04, Vol.30 (4), p.611-621

2020

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Author Correction: Single-cell multi-ome regression models identify functional and disease-associated enhancers and enable chromatin potential analysis

Nature genetics, 2024-06, Vol.56 (6), p.1319-1319

2024

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Evaluating the informativeness of deep learning annotations for human complex diseases

Nature communications, 2020-09, Vol.11 (1), p.4703-4703, Article 4703

2020

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Leveraging single-cell ATAC-seq and RNA-seq to identify disease-critical fetal and adult brain cell types

Nature communications, 2024-01, Vol.15 (1), p.563-11, Article 563

2024

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Dispersal syndromes drive the formation of biogeographical regions, illustrated by the case of Wallace’s Line

Global ecology and biogeography, 2021-03, Vol.30 (3), p.685-696

2021

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Inference and visualization of DNA damage patterns using a grade of membership model

Bioinformatics, 2019-04, Vol.35 (8), p.1292-1298

2019

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Improving the informativeness of Mendelian disease-derived pathogenicity scores for common disease

Nature communications, 2020-12, Vol.11 (1), p.6258-6258, Article 6258

2020

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CRISPR screening uncovers a long-range enhancer for ONECUT1 in pancreatic differentiation and links a diabetes risk variant

Cell reports (Cambridge), 2024-08, Vol.43 (8), p.114640-114640, Article 114640

2024

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Publisher Correction: SAIGE-GENE+ improves the efficiency and accuracy of set-based rare variant association tests

Nature genetics, 2022-11, Vol.54 (11), p.1755-1755

2022

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Photochemical Modulation of Biosafe Manganese Nanoparticles on Vigna radiata: A Detailed Molecular, Biochemical, and Biophysical Study

Environmental science & technology, 2013-11, Vol.47 (22), p.13122-13131

2013

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Correction: Visualizing the structure of RNA-seq expression data using grade of membership models

PLoS genetics, 2017-05, Vol.13 (5), p.e1006759-e1006759

2017

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Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge

Bioinformatics, 2013-11, Vol.29 (22), p.2892-2899

2013

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SNP-to-gene linking strategies reveal contributions of enhancer-related and candidate master-regulator genes to autoimmune disease

Cell genomics, 2022-07, Vol.2 (7), p.100145, Article 100145

2022

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Colloidal stability and coagulation kinetics study of different sized sulphur nanoparticles

Journal of experimental nanoscience, 2013-04, Vol.8 (3), p.267-272

2013

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COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets

Nature (London), 2021-07, Vol.595 (7865), p.107-113

2021

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Visualizing the structure of RNA-seq expression data using grade of membership models

Combining SNP-to-gene linking strategies to identify disease genes and assess disease omnigenicity

Improving the trans-ancestry portability of polygenic risk scores by prioritizing variants in predicted cell-type-specific regulatory elements

Polygenic architecture of rare coding variation across 394,783 exomes

A new sequence logo plot to highlight enrichment and depletion

Regional influences on community structure across the tropical-temperate divide

SAIGE-GENE+ improves the efficiency and accuracy of set-based rare variant association tests

Identifying disease-critical cell types and cellular processes by integrating single-cell RNA-sequencing and human genetics

Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data

Single-cell multi-ome regression models identify functional and disease-associated enhancers and enable chromatin potential analysis

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

Author Correction: Single-cell multi-ome regression models identify functional and disease-associated enhancers and enable chromatin potential analysis

Evaluating the informativeness of deep learning annotations for human complex diseases

Leveraging single-cell ATAC-seq and RNA-seq to identify disease-critical fetal and adult brain cell types

Dispersal syndromes drive the formation of biogeographical regions, illustrated by the case of Wallace’s Line

Inference and visualization of DNA damage patterns using a grade of membership model

Improving the informativeness of Mendelian disease-derived pathogenicity scores for common disease

CRISPR screening uncovers a long-range enhancer for ONECUT1 in pancreatic differentiation and links a diabetes risk variant

Publisher Correction: SAIGE-GENE+ improves the efficiency and accuracy of set-based rare variant association tests

Photochemical Modulation of Biosafe Manganese Nanoparticles on Vigna radiata: A Detailed Molecular, Biochemical, and Biophysical Study

Correction: Visualizing the structure of RNA-seq expression data using grade of membership models

Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge

SNP-to-gene linking strategies reveal contributions of enhancer-related and candidate master-regulator genes to autoimmune disease

Colloidal stability and coagulation kinetics study of different sized sulphur nanoparticles

COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets

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