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Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis

Nature communications, 2020-12, Vol.11 (1), p.6272-6272, Article 6272

2020

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Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology

Nature biotechnology, 2021-09, Vol.39 (9), p.1115-1128

2021

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Diagnosis of fusion genes using targeted RNA sequencing

Nature communications, 2019-03, Vol.10 (1), p.1388-1388, Article 1388

2019

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The Dimensions, Dynamics, and Relevance of the Mammalian Noncoding Transcriptome

Trends in genetics, 2017-07, Vol.33 (7), p.464-478

2017

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Reference standards for next-generation sequencing

Nature reviews. Genetics, 2017-08, Vol.18 (8), p.473-484

2017

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Two transcriptionally distinct pathways drive female development in a reptile with both genetic and temperature dependent sex determination

PLoS genetics, 2021-04, Vol.17 (4), p.e1009465-e1009465

2021

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Accelerated nanopore basecalling with SLOW5 data format

Bioinformatics (Oxford, England), 2023-06, Vol.39 (6)

2023

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Respiratory viral co-infections among SARS-CoV-2 cases confirmed by virome capture sequencing

Scientific reports, 2021-02, Vol.11 (1), p.3934-3934, Article 3934

2021

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An update on the neurological short tandem repeat expansion disorders and the emergence of long-read sequencing diagnostics

Acta neuropathologica communications, 2021-05, Vol.9 (1), p.98-20, Article 98

2021

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Sequencing and characterizing short tandem repeats in the human genome

Nature reviews. Genetics, 2024-07, Vol.25 (7), p.460-475

2024

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Flexible and efficient handling of nanopore sequencing signal data with slow5tools

Genome Biology, 2023-04, Vol.24 (1), p.69-12, Article 69

2023

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Interactive visualization of nanopore sequencing signal data with Squigualiser

Bioinformatics (Oxford, England), 2024-08, Vol.40 (8)

2024

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Simulation of nanopore sequencing signal data with tunable parameters

Genome research, 2024-05, Vol.34 (5), p.778-783

2024

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Synthetic microbe communities provide internal reference standards for metagenome sequencing and analysis

Nature communications, 2018-08, Vol.9 (1), p.3096-10, Article 3096

2018

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Spliced synthetic genes as internal controls in RNA sequencing experiments

Nature methods, 2016-09, Vol.13 (9), p.792-798

2016

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A universal and independent synthetic DNA ladder for the quantitative measurement of genomic features

Nature communications, 2020-07, Vol.11 (1), p.3609-3609, Article 3609

2020

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Fast nanopore sequencing data analysis with SLOW5

Nature biotechnology, 2022-07, Vol.40 (7), p.1026-1029

2022

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Extensive DNA methylome rearrangement during early lamprey embryogenesis

Nature communications, 2024-03, Vol.15 (1), p.1977-1977, Article 1977

2024

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New chromosome-scale genomes provide insights into marine adaptations of sea snakes (Hydrophis: Elapidae)

BMC biology, 2023-12, Vol.21 (1), p.284-23, Article 284

2023

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CAR+ and CAR− T cells share a differentiation trajectory into an NK-like subset after CD19 CAR T cell infusion in patients with B cell malignancies

Nature communications, 2023-11, Vol.14 (1), p.7767-7767, Article 7767

2023

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Chimeric synthetic reference standards enable cross-validation of positive and negative controls in SARS-CoV-2 molecular tests

Scientific reports, 2021-01, Vol.11 (1), p.2636-2636, Article 2636

2021

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Chiral DNA sequences as commutable controls for clinical genomics

Nature communications, 2019-03, Vol.10 (1), p.1342-13, Article 1342

2019

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InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses

Bioinformatics (Oxford, England), 2022-02, Vol.38 (5), p.1443-1446

2022

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Oncogenic cooperation between TCF7-SPI1 and NRAS(G12D) requires β-catenin activity to drive T-cell acute lymphoblastic leukemia

Nature communications, 2021-07, Vol.12 (1), p.1-15, Article 4164

2021

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Use of synthetic DNA spike-in controls (sequins) for human genome sequencing

Nature protocols, 2019-07, Vol.14 (7), p.2119-2151

2019

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Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis

Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology

Diagnosis of fusion genes using targeted RNA sequencing

The Dimensions, Dynamics, and Relevance of the Mammalian Noncoding Transcriptome

Reference standards for next-generation sequencing

Two transcriptionally distinct pathways drive female development in a reptile with both genetic and temperature dependent sex determination

Accelerated nanopore basecalling with SLOW5 data format

Respiratory viral co-infections among SARS-CoV-2 cases confirmed by virome capture sequencing

An update on the neurological short tandem repeat expansion disorders and the emergence of long-read sequencing diagnostics

Sequencing and characterizing short tandem repeats in the human genome

Flexible and efficient handling of nanopore sequencing signal data with slow5tools

Interactive visualization of nanopore sequencing signal data with Squigualiser

Simulation of nanopore sequencing signal data with tunable parameters

Synthetic microbe communities provide internal reference standards for metagenome sequencing and analysis

Spliced synthetic genes as internal controls in RNA sequencing experiments

A universal and independent synthetic DNA ladder for the quantitative measurement of genomic features

Fast nanopore sequencing data analysis with SLOW5

Extensive DNA methylome rearrangement during early lamprey embryogenesis

New chromosome-scale genomes provide insights into marine adaptations of sea snakes (Hydrophis: Elapidae)

CAR+ and CAR− T cells share a differentiation trajectory into an NK-like subset after CD19 CAR T cell infusion in patients with B cell malignancies

Chimeric synthetic reference standards enable cross-validation of positive and negative controls in SARS-CoV-2 molecular tests

Chiral DNA sequences as commutable controls for clinical genomics

InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses

Oncogenic cooperation between TCF7-SPI1 and NRAS(G12D) requires β-catenin activity to drive T-cell acute lymphoblastic leukemia

Use of synthetic DNA spike-in controls (sequins) for human genome sequencing

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