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Application of next generation sequencing in clinical microbiology and infection prevention

Journal of biotechnology, 2017-02, Vol.243, p.16-24

2017

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Staphylococcus aureus biofilm formation at the physiologic glucose concentration depends on the S. aureus lineage

BMC microbiology, 2009-10, Vol.9 (1), p.229-229, Article 229

2009

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MRSA Prevalence and Associated Risk Factors among Health-Care Workers in Non-outbreak Situations in the Dutch-German EUREGIO

Frontiers in microbiology, 2016-08, Vol.7, p.1273-1273

2016

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Characterization of a CTX-M-15 Producing Klebsiella Pneumoniae Outbreak Strain Assigned to a Novel Sequence Type (1427)

Frontiers in microbiology, 2015, Vol.6, p.1250-1250

2015

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The evolution of Staphylococcus aureus

Infection, genetics and evolution, 2008-12, Vol.8 (6), p.747-763

2008

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Improved Multiple-Locus Variable-Number Tandem-Repeat Assay for Staphylococcus aureus Genotyping, Providing a Highly Informative Technique Together with Strong Phylogenetic Value

Journal of Clinical Microbiology, 2009-10, Vol.47 (10), p.3121-3128

2009

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Optical Fingerprinting in Bacterial Epidemiology: Raman Spectroscopy as a Real-Time Typing Method

Journal of Clinical Microbiology, 2009-03, Vol.47 (3), p.652-659

2009

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Evaluation of Nanopore Sequencing as a Diagnostic Tool for the Rapid Identification of Mycoplasma bovis from Individual and Pooled Respiratory Tract Samples

Journal of clinical microbiology, 2021-11, Vol.59 (12), p.e0111021-e0111021

2021

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Rapid Identification of Mycoplasma bovis Strains from Bovine Bronchoalveolar Lavage Fluid with Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry after Enrichment Procedure

Journal of clinical microbiology, 2020-05, Vol.58 (6)

2020

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Detection of Legionella Anisa in Water from Hospital Dental Chair Units and Molecular Characterization by Whole-Genome Sequencing

Microorganisms (Basel), 2018-07, Vol.6 (3), p.71

2018

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The molecular evolution of hospital- and community-associated methicillin-resistant Staphylococcus aureus

Current molecular medicine, 2009-03, Vol.9 (2), p.100-115

2009

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Molecular Characterization of Staphylococcus aureus Bloodstream Isolates Collected in a Dutch University Hospital between 1999 and 2006

Journal of Clinical Microbiology, 2008-07, Vol.46 (7), p.2438-2441

2008

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Cross-border dissemination of methicillin-resistant Staphylococcus aureus, Euregio Meuse-Rhin region

Emerging infectious diseases, 2009-05, Vol.15 (5), p.727-734

2009

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Use of whole-genome sequencing to trace, control and characterize the regional expansion of extended-spectrum β-lactamase producing ST15 Klebsiella pneumoniae

Scientific reports, 2016-02, Vol.6 (1), p.20840-20840, Article 20840

2016

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Evaluation of an Accelerated Workflow for Surveillance of ESBL (CTX-M)-Producing Escherichia coli Using Amplicon-Based Next-Generation Sequencing and Automated Analysis

Microorganisms (Basel), 2018-01, Vol.6 (1), p.6

2018

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Different Clonal Complexes of Methicillin-Resistant Staphylococcus aureus Are Disseminated in the Euregio Meuse-Rhine Region

Antimicrobial Agents and Chemotherapy, 2005-10, Vol.49 (10), p.4263-4271

2005

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European external quality assessments for identification, molecular typing and characterization of Staphylococcus aureus

Journal of antimicrobial chemotherapy, 2018-10, Vol.73 (10), p.2662-2666

2018

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Reprint of “Application of next generation sequencing in clinical microbiology and infection prevention”

Journal of biotechnology, 2017-05, Vol.250, p.2-10

2017

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Molecular characterization of methicillin-resistant Staphylococcus aureus bloodstream isolates from Croatia

Journal of antimicrobial chemotherapy, 2006-02, Vol.57 (2), p.331-334

2006

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The Staphylococcus aureus lineage-specific markers collagen adhesin and toxic shock syndrome toxin 1 distinguish multilocus sequence typing clonal complexes within spa clonal complexes

Diagnostic microbiology and infectious disease, 2009-10, Vol.65 (2), p.116-122

2009

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Rapid detection of Panton–Valentine leukocidin from clinical isolates of Staphylococcus aureus strains by real-time PCR

FEMS microbiology letters, 2004-11, Vol.240 (2), p.225-228

2004

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A rapid, 2-well, multiplex real-time polymerase chain reaction assay for the detection of SCCmec types I to V in methicillin-resistant Staphylococcus aureus

Diagnostic microbiology and infectious disease, 2009-12, Vol.65 (4), p.384-391

2009

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The prevalence of the Staphylococcus aureus tst gene among community- and hospital-acquired strains and isolates from Wegener’s Granulomatosis patients

FEMS microbiology letters, 2005-04, Vol.245 (1), p.185-189

2005

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A rapid, 2-well, multiplex real-time polymerase chain reaction assay for the detection of SCC mec types I to V in methicillin-resistant Staphylococcus aureus

Diagnostic microbiology and infectious disease, 2009, Vol.65 (4), p.384-391

2009

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The population structure of Staphylococcus aureus among general practice patients from The Netherlands

Clinical microbiology and infection, 2009-02, Vol.15 (2), p.137-143

2009

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Application of next generation sequencing in clinical microbiology and infection prevention

Staphylococcus aureus biofilm formation at the physiologic glucose concentration depends on the S. aureus lineage

MRSA Prevalence and Associated Risk Factors among Health-Care Workers in Non-outbreak Situations in the Dutch-German EUREGIO

Characterization of a CTX-M-15 Producing Klebsiella Pneumoniae Outbreak Strain Assigned to a Novel Sequence Type (1427)

The evolution of Staphylococcus aureus

Improved Multiple-Locus Variable-Number Tandem-Repeat Assay for Staphylococcus aureus Genotyping, Providing a Highly Informative Technique Together with Strong Phylogenetic Value

Optical Fingerprinting in Bacterial Epidemiology: Raman Spectroscopy as a Real-Time Typing Method

Evaluation of Nanopore Sequencing as a Diagnostic Tool for the Rapid Identification of Mycoplasma bovis from Individual and Pooled Respiratory Tract Samples

Rapid Identification of Mycoplasma bovis Strains from Bovine Bronchoalveolar Lavage Fluid with Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry after Enrichment Procedure

Detection of Legionella Anisa in Water from Hospital Dental Chair Units and Molecular Characterization by Whole-Genome Sequencing

The molecular evolution of hospital- and community-associated methicillin-resistant Staphylococcus aureus

Molecular Characterization of Staphylococcus aureus Bloodstream Isolates Collected in a Dutch University Hospital between 1999 and 2006

Cross-border dissemination of methicillin-resistant Staphylococcus aureus, Euregio Meuse-Rhin region

Use of whole-genome sequencing to trace, control and characterize the regional expansion of extended-spectrum β-lactamase producing ST15 Klebsiella pneumoniae

Evaluation of an Accelerated Workflow for Surveillance of ESBL (CTX-M)-Producing Escherichia coli Using Amplicon-Based Next-Generation Sequencing and Automated Analysis

Different Clonal Complexes of Methicillin-Resistant Staphylococcus aureus Are Disseminated in the Euregio Meuse-Rhine Region

European external quality assessments for identification, molecular typing and characterization of Staphylococcus aureus

Reprint of “Application of next generation sequencing in clinical microbiology and infection prevention”

Molecular characterization of methicillin-resistant Staphylococcus aureus bloodstream isolates from Croatia

The Staphylococcus aureus lineage-specific markers collagen adhesin and toxic shock syndrome toxin 1 distinguish multilocus sequence typing clonal complexes within spa clonal complexes

Rapid detection of Panton–Valentine leukocidin from clinical isolates of Staphylococcus aureus strains by real-time PCR

A rapid, 2-well, multiplex real-time polymerase chain reaction assay for the detection of SCCmec types I to V in methicillin-resistant Staphylococcus aureus

The prevalence of the Staphylococcus aureus tst gene among community- and hospital-acquired strains and isolates from Wegener’s Granulomatosis patients

A rapid, 2-well, multiplex real-time polymerase chain reaction assay for the detection of SCC mec types I to V in methicillin-resistant Staphylococcus aureus

The population structure of Staphylococcus aureus among general practice patients from The Netherlands

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