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BLAST-EXPLORER helps you building datasets for phylogenetic analysis

BMC evolutionary biology, 2010-01, Vol.10 (1), p.8, Article 8

2010

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Genotyping by sequencing can reveal the complex mosaic genomes in gene pools resulting from reticulate evolution: a case study in diploid and polyploid citrus

Annals of botany, 2019-07, Vol.123 (7), p.1231-1251

2019

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Clustered Regularly Interspaced Short Palindromic Repeats in Xanthomonas citri—Witnesses to a Global Expansion of a Bacterial Pathogen over Time

Microorganisms (Basel), 2022-08, Vol.10 (9), p.1715

2022

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Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica grown at contrasted temperatures

The New phytologist, 2013-10, Vol.200 (1), p.251-260

2013

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getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories

BMC bioinformatics, 2022-07, Vol.23 (1), p.268-11, Article 268

2022

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An improved method for TAL effectors DNA-binding sites prediction reveals functional convergence in TAL repertoires of Xanthomonas oryzae strains

PloS one, 2013-07, Vol.8 (7), p.e68464-e68464

2013

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SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects

BMC bioinformatics, 2011-05, Vol.12 (1), p.134-134, Article 134

2011

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Transposable elements are a major cause of somatic polymorphism in Vitis vinifera L

PloS one, 2012-03, Vol.7 (3), p.e32973-e32973

2012

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Regulatory divergence between parental alleles determines gene expression patterns in hybrids

Genome biology and evolution, 2015-04, Vol.7 (4), p.1110-1121

2015

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Naegleria genus pangenome reveals new structural and functional insights into the versatility of these free-living amoebae

Frontiers in microbiology, 2023-02, Vol.13, p.1056418-1056418

2023

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Analyses of the Root-Knot Nematode (Meloidogyne graminicola) Transcriptome during Host Infection Highlight Specific Gene Expression Profiling in Resistant Rice Plants

Pathogens (Basel), 2020-08, Vol.9 (8), p.644

2020

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Inter-genomic DNA Exchanges and Homeologous Gene Silencing Shaped the Nascent Allopolyploid Coffee Genome (Coffea arabica L.)

G3 : genes - genomes - genetics, 2016-09, Vol.6 (9), p.2937-2948

2016

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Intermediate Inheritance with Disomic Tendency in Tetraploid Intergeneric Citrus × Poncirus Hybrids Enhances the Efficiency of Citrus Rootstock Breeding

Agronomy (Basel), 2020-12, Vol.10 (12), p.1961

2020

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The fly route of extended-spectrum-β-lactamase-producing Enterobacteriaceae dissemination in a cattle farm: from the ecosystem to the molecular scale

Frontiers in antibiotics, 2024-04, Vol.3

2024

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Limited Transmission of Klebsiella pneumoniae among Humans, Animals, and the Environment in a Caribbean Island, Guadeloupe (French West Indies)

Microbiology spectrum, 2022-10, Vol.10 (5), p.e0124222-e0124222

2022

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Meiotic Behaviors of Allotetraploid Citrus Drive the Interspecific Recombination Landscape, the Genetic Structures, and Traits Inheritance in Tetrazyg Progenies Aiming to Select New Rootstocks

Plants (Basel), 2023-04, Vol.12 (8), p.1630

2023

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Emergence of a Novel Lineage and Wide Spread of a blaCTX-M-15/IncHI2/ST1 Plasmid among Nosocomial Enterobacter in Guadeloupe

Antibiotics (Basel), 2022-10, Vol.11 (10), p.1443

2022

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On the Close Relatedness of Two Rice-Parasitic Root-Knot Nematode Species and the Recent Expansion of Meloidogyne graminicola in Southeast Asia

Genes, 2019-02, Vol.10 (2), p.175

2019

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Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton

PloS one, 2012-11, Vol.7 (11), p.e48855-e48855

2012

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Shifting From Sectoral to Integrated Surveillance by Changing Collaborative Practices: Application to West Nile Virus Surveillance in a Small Island State of the Caribbean

Frontiers in public health, 2021-06, Vol.9, p.649190-649190

2021

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PanExplorer: a web-based tool for exploratory analysis and visualization of bacterial pan-genomes

Bioinformatics, 2022-09, Vol.38 (18), p.4412-4414

2022

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TAL Effector Repertoires of Strains of Xanthomonas phaseoli pv. manihotis in Commercial Cassava Crops Reveal High Diversity at the Country Scale

Microorganisms (Basel), 2021-02, Vol.9 (2), p.315

2021

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SAT, a flexible and optimized Web application for SSR marker development

BMC bioinformatics, 2007-11, Vol.8 (1), p.465-465, Article 465

2007

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Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust (Austropuccinia psidii)

Data in brief, 2019-02, Vol.22, p.794-811

2019

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SNiPloid: A Utility to Exploit High-Throughput SNP Data Derived from RNA-Seq in Allopolyploid Species

International Journal of Plant Genomics, 2013, Vol.2013 (2013), p.28-33

2013

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BLAST-EXPLORER helps you building datasets for phylogenetic analysis

Genotyping by sequencing can reveal the complex mosaic genomes in gene pools resulting from reticulate evolution: a case study in diploid and polyploid citrus

Clustered Regularly Interspaced Short Palindromic Repeats in Xanthomonas citri—Witnesses to a Global Expansion of a Bacterial Pathogen over Time

Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica grown at contrasted temperatures

getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories

An improved method for TAL effectors DNA-binding sites prediction reveals functional convergence in TAL repertoires of Xanthomonas oryzae strains

SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects

Transposable elements are a major cause of somatic polymorphism in Vitis vinifera L

Regulatory divergence between parental alleles determines gene expression patterns in hybrids

Naegleria genus pangenome reveals new structural and functional insights into the versatility of these free-living amoebae

Analyses of the Root-Knot Nematode (Meloidogyne graminicola) Transcriptome during Host Infection Highlight Specific Gene Expression Profiling in Resistant Rice Plants

Inter-genomic DNA Exchanges and Homeologous Gene Silencing Shaped the Nascent Allopolyploid Coffee Genome (Coffea arabica L.)

Intermediate Inheritance with Disomic Tendency in Tetraploid Intergeneric Citrus × Poncirus Hybrids Enhances the Efficiency of Citrus Rootstock Breeding

The fly route of extended-spectrum-β-lactamase-producing Enterobacteriaceae dissemination in a cattle farm: from the ecosystem to the molecular scale

Limited Transmission of Klebsiella pneumoniae among Humans, Animals, and the Environment in a Caribbean Island, Guadeloupe (French West Indies)

Meiotic Behaviors of Allotetraploid Citrus Drive the Interspecific Recombination Landscape, the Genetic Structures, and Traits Inheritance in Tetrazyg Progenies Aiming to Select New Rootstocks

Emergence of a Novel Lineage and Wide Spread of a blaCTX-M-15/IncHI2/ST1 Plasmid among Nosocomial Enterobacter in Guadeloupe

On the Close Relatedness of Two Rice-Parasitic Root-Knot Nematode Species and the Recent Expansion of Meloidogyne graminicola in Southeast Asia

Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton

Shifting From Sectoral to Integrated Surveillance by Changing Collaborative Practices: Application to West Nile Virus Surveillance in a Small Island State of the Caribbean

PanExplorer: a web-based tool for exploratory analysis and visualization of bacterial pan-genomes

TAL Effector Repertoires of Strains of Xanthomonas phaseoli pv. manihotis in Commercial Cassava Crops Reveal High Diversity at the Country Scale

SAT, a flexible and optimized Web application for SSR marker development

Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust (Austropuccinia psidii)

SNiPloid: A Utility to Exploit High-Throughput SNP Data Derived from RNA-Seq in Allopolyploid Species

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