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Virus detection via programmable Type III-A CRISPR-Cas systems

Nature communications, 2021-09, Vol.12 (1), p.5653-10, Article 5653

2021

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Topologically associating domains are stable units of replication-timing regulation

Nature (London), 2014-11, Vol.515 (7527), p.402-405

2014

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Multiple roles of H2A.Z in regulating promoter chromatin architecture in human cells

Nature communications, 2021-05, Vol.12 (1), p.2524-2524, Article 2524

2021

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The native cistrome and sequence motif families of the maize ear

PLoS genetics, 2021-08, Vol.17 (8), p.e1009689-e1009689

2021

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Differential Nuclease Sensitivity Profiling of Chromatin Reveals Biochemical Footprints Coupled to Gene Expression and Functional DNA Elements in Maize

The Plant cell, 2014-10, Vol.26 (10), p.3883-3893

2014

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BAF250a Protein Regulates Nucleosome Occupancy and Histone Modifications in Priming Embryonic Stem Cell Differentiation

The Journal of biological chemistry, 2015-07, Vol.290 (31), p.19343-19352

2015

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Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding

Proceedings of the National Academy of Sciences - PNAS, 2012-07, Vol.109 (31), p.12574-12579

2012

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iSeg: an efficient algorithm for segmentation of genomic and epigenomic data

BMC bioinformatics, 2018-04, Vol.19 (1), p.131-131, Article 131

2018

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Nucleosome Repositioning: A Novel Mechanism for Nicotine- and Cocaine-Induced Epigenetic Changes

PloS one, 2015-09, Vol.10 (9), p.e0139103-e0139103

2015

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Pre-replication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone

Nucleic acids research, 2011-04, Vol.39 (8), p.3141-3155

2011

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Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L)

Data in brief, 2018-10, Vol.20, p.358-363

2018

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DNA-Encoded Chromatin Structural Intron Boundary Signals Identify Conserved Genes with Common Function

International journal of genomics, 2015-01, Vol.2015 (2015), p.1-10

2015

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Regulated large-scale nucleosome density patterns and precise nucleosome positioning correlate with V(D)J recombination

Proceedings of the National Academy of Sciences - PNAS, 2016-10, Vol.113 (42), p.E6427-E6436

2016

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Changes in nucleosome occupancy occur in a chromosome specific manner

Genomics data, 2014-12, Vol.2 (C), p.114-116

2014

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Label-Free Relative Quantitation of Isobaric and Isomeric Human Histone H2A and H2B Variants by Fourier Transform Ion Cyclotron Resonance Top-Down MS/MS

Journal of proteome research, 2016-09, Vol.15 (9), p.3196-3203

2016

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Stimulation of the Drosophila immune system alters genome-wide nucleosome occupancy

Genomics data, 2015-03, Vol.3 (C), p.146-147

2015

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Genome-Wide Prediction of Nucleosome Occupancy in Maize Reveals Plant Chromatin Structural Features at Genes and Other Elements at Multiple Scales

Plant physiology (Bethesda), 2013-06, Vol.162 (2), p.1127-1141

2013

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Hierarchical regulation of the genome: global changes in nucleosome organization potentiate genome response

Oncotarget, 2016-02, Vol.7 (6), p.6460-6475

2016

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Comprehensive nucleosome mapping of the human genome in cancer progression

Oncotarget, 2016-03, Vol.7 (12), p.13429-13445

2016

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Commentary: Epigenetic Regulation of Phosphodiesterases 2A and 3A Underlies Compromised β-Adrenergic Signaling in an iPSC Model of Dilated Cardiomyopathy

Frontiers in physiology, 2016-09, Vol.7, p.418-418

2016

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The spring-loaded genome: nucleosome redistributions are widespread, transient, and DNA-directed

Genome research, 2014-02, Vol.24 (2), p.251-259

2014

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Chromatin patterns associated with lung adenocarcinoma progression

Cell cycle (Georgetown, Tex.), 2013-05, Vol.12 (10), p.1536-1543

2013

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Independent and complementary methods for large-scale structural analysis of mammalian chromatin

Genome Research, 2007-06, Vol.17 (6), p.928-939

2007

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Expression of the Brn-3b transcription factor correlates with expression of HSP-27 in breast cancer biopsies and is required for maximal activation of the HSP-27 promoter

Cancer research (Chicago, Ill.), 2005-04, Vol.65 (8), p.3072-3080

2005

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Mechanistic studies and application of a type-IIIA CRISPR-Cas system

Biophysical journal, 2022-02, Vol.121 (3), p.477a-478a

2022

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Virus detection via programmable Type III-A CRISPR-Cas systems

Topologically associating domains are stable units of replication-timing regulation

Multiple roles of H2A.Z in regulating promoter chromatin architecture in human cells

The native cistrome and sequence motif families of the maize ear

Differential Nuclease Sensitivity Profiling of Chromatin Reveals Biochemical Footprints Coupled to Gene Expression and Functional DNA Elements in Maize

BAF250a Protein Regulates Nucleosome Occupancy and Histone Modifications in Priming Embryonic Stem Cell Differentiation

Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding

iSeg: an efficient algorithm for segmentation of genomic and epigenomic data

Nucleosome Repositioning: A Novel Mechanism for Nicotine- and Cocaine-Induced Epigenetic Changes

Pre-replication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone

Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L)

DNA-Encoded Chromatin Structural Intron Boundary Signals Identify Conserved Genes with Common Function

Regulated large-scale nucleosome density patterns and precise nucleosome positioning correlate with V(D)J recombination

Changes in nucleosome occupancy occur in a chromosome specific manner

Label-Free Relative Quantitation of Isobaric and Isomeric Human Histone H2A and H2B Variants by Fourier Transform Ion Cyclotron Resonance Top-Down MS/MS

Stimulation of the Drosophila immune system alters genome-wide nucleosome occupancy

Genome-Wide Prediction of Nucleosome Occupancy in Maize Reveals Plant Chromatin Structural Features at Genes and Other Elements at Multiple Scales

Hierarchical regulation of the genome: global changes in nucleosome organization potentiate genome response

Comprehensive nucleosome mapping of the human genome in cancer progression

Commentary: Epigenetic Regulation of Phosphodiesterases 2A and 3A Underlies Compromised β-Adrenergic Signaling in an iPSC Model of Dilated Cardiomyopathy

The spring-loaded genome: nucleosome redistributions are widespread, transient, and DNA-directed

Chromatin patterns associated with lung adenocarcinoma progression

Independent and complementary methods for large-scale structural analysis of mammalian chromatin

Expression of the Brn-3b transcription factor correlates with expression of HSP-27 in breast cancer biopsies and is required for maximal activation of the HSP-27 promoter

Mechanistic studies and application of a type-IIIA CRISPR-Cas system

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