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Distinctive structural motifs co‐ordinate the catalytic nucleophile and the residues of the oxyanion hole in the alpha/beta‐hydrolase fold enzymes

Protein science, 2019-02, Vol.28 (2), p.344-364

2019

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Structural Catalytic Core of the Members of the Superfamily of Acid Proteases

Molecules (Basel, Switzerland), 2024-08, Vol.29 (15), p.3451

2024

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Canonical structural-binding modes in the calmodulin-target protein complexes

Journal of biomolecular structure & dynamics, 2023-11, Vol.41 (16), p.7582-7594

2023

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Structural and functional significance of the amino acid differences Val35Thr, Ser46Ala, Asn65Ser, and Ala94Ser in 3C-like proteinases from SARS-CoV-2 and SARS-CoV

International journal of biological macromolecules, 2021-12, Vol.193, p.2113-2120

2021

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Papain-like cysteine proteinase zone (PCP-zone) and PCP structural catalytic core (PCP-SCC) of enzymes with cysteine proteinase fold

International journal of biological macromolecules, 2020-12, Vol.165 (Pt A), p.1438-1446

2020

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NBCZone: Universal three-dimensional construction of eleven amino acids near the catalytic nucleophile and base in the superfamily of (chymo)trypsin-like serine fold proteases

International journal of biological macromolecules, 2020-06, Vol.153, p.399-411

2020

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Structural leitmotif and functional variations of the structural catalytic core in (chymo)trypsin-like serine/cysteine fold proteinases

International journal of biological macromolecules, 2021-05, Vol.179, p.601-609

2021

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The acid-base-nucleophile catalytic triad in ABH-fold enzymes is coordinated by a set of structural elements

PloS one, 2020-02, Vol.15 (2), p.e0229376-e0229376

2020

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Monomeric state of S100P protein: Experimental and molecular dynamics study

Cell calcium (Edinburgh), 2019-06, Vol.80, p.152-159

2019

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Analyzing the structural and functional roles of residues from the ‘black’ and ‘gray’ clusters of human S100P protein

Cell calcium (Edinburgh), 2019-06, Vol.80, p.46-55

2019

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Interferon Beta Activity Is Modulated via Binding of Specific S100 Proteins

International journal of molecular sciences, 2020-12, Vol.21 (24), p.9473

2020

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Two structural motifs within canonical EF-hand calcium-binding domains identify five different classes of calcium buffers and sensors

PloS one, 2014-10, Vol.9 (10), p.e109287-e109287

2014

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Highly specific interaction of monomeric S100P protein with interferon beta

International journal of biological macromolecules, 2020-01, Vol.143, p.633-639

2020

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The active site of the SGNH hydrolase-like fold proteins: Nucleophile–oxyanion (Nuc-Oxy) and Acid–Base zones

Current research in structural biology, 2024-01, Vol.7, p.100123-100123, Article 100123

2024

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System Approach for Building of Calcium-Binding Sites in Proteins

Biomolecules (Basel, Switzerland), 2020-04, Vol.10 (4), p.588

2020

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Extremophilic 50S Ribosomal RNA-Binding Protein L35Ae as a Basis for Engineering of an Alternative Protein Scaffold

PloS one, 2015-08, Vol.10 (8), p.e0134906-e0134906

2015

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Experimental Insight into the Structural and Functional Roles of the 'Black' and 'Gray' Clusters in Recoverin, a Calcium Binding Protein with Four EF-Hand Motifs

Molecules (Basel, Switzerland), 2019-07, Vol.24 (13), p.2494

2019

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Building kit for metal cation binding sites in proteins

Biochemical and biophysical research communications, 2017-12, Vol.494 (1-2), p.311-317

2017

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On the relationship between the conserved ‘black’ and ‘gray’ structural clusters and intrinsic disorder in parvalbumins

International journal of biological macromolecules, 2018-12, Vol.120 (Pt A), p.1055-1062

2018

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Novel calcium recognition constructions in proteins: Calcium blade and EF-hand zone

Biochemical and biophysical research communications, 2017-02, Vol.483 (3), p.958-963

2017

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Comprehensive analysis of the roles of ‘black’ and ‘gray’ clusters in structure and function of rat β-parvalbumin

Cell calcium (Edinburgh), 2018-11, Vol.75, p.64-78

2018

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Apo-parvalbumin as an intrinsically disordered protein

Proteins, structure, function, and bioinformatics, 2008-08, Vol.72 (3), p.822-836

2008

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Early chordate origin of the vertebrate integrin αI domains

PloS one, 2014-11, Vol.9 (11), p.e112064

2014

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Interleukin-11 binds specific EF-hand proteins via their conserved structural motifs

Journal of biomolecular structure & dynamics, 2017-01, Vol.35 (1), p.78-91

2017

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Oxidation mimicking substitution of conservative cysteine in recoverin suppresses its membrane association

Amino acids, 2012-04, Vol.42 (4), p.1435-1442

2012

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Distinctive structural motifs co‐ordinate the catalytic nucleophile and the residues of the oxyanion hole in the alpha/beta‐hydrolase fold enzymes

Structural Catalytic Core of the Members of the Superfamily of Acid Proteases

Canonical structural-binding modes in the calmodulin-target protein complexes

Structural and functional significance of the amino acid differences Val35Thr, Ser46Ala, Asn65Ser, and Ala94Ser in 3C-like proteinases from SARS-CoV-2 and SARS-CoV

Papain-like cysteine proteinase zone (PCP-zone) and PCP structural catalytic core (PCP-SCC) of enzymes with cysteine proteinase fold

NBCZone: Universal three-dimensional construction of eleven amino acids near the catalytic nucleophile and base in the superfamily of (chymo)trypsin-like serine fold proteases

Structural leitmotif and functional variations of the structural catalytic core in (chymo)trypsin-like serine/cysteine fold proteinases

The acid-base-nucleophile catalytic triad in ABH-fold enzymes is coordinated by a set of structural elements

Monomeric state of S100P protein: Experimental and molecular dynamics study

Analyzing the structural and functional roles of residues from the ‘black’ and ‘gray’ clusters of human S100P protein

Interferon Beta Activity Is Modulated via Binding of Specific S100 Proteins

Two structural motifs within canonical EF-hand calcium-binding domains identify five different classes of calcium buffers and sensors

Highly specific interaction of monomeric S100P protein with interferon beta

The active site of the SGNH hydrolase-like fold proteins: Nucleophile–oxyanion (Nuc-Oxy) and Acid–Base zones

System Approach for Building of Calcium-Binding Sites in Proteins

Extremophilic 50S Ribosomal RNA-Binding Protein L35Ae as a Basis for Engineering of an Alternative Protein Scaffold

Experimental Insight into the Structural and Functional Roles of the 'Black' and 'Gray' Clusters in Recoverin, a Calcium Binding Protein with Four EF-Hand Motifs

Building kit for metal cation binding sites in proteins

On the relationship between the conserved ‘black’ and ‘gray’ structural clusters and intrinsic disorder in parvalbumins

Novel calcium recognition constructions in proteins: Calcium blade and EF-hand zone

Comprehensive analysis of the roles of ‘black’ and ‘gray’ clusters in structure and function of rat β-parvalbumin

Apo-parvalbumin as an intrinsically disordered protein

Early chordate origin of the vertebrate integrin αI domains

Interleukin-11 binds specific EF-hand proteins via their conserved structural motifs

Oxidation mimicking substitution of conservative cysteine in recoverin suppresses its membrane association

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