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A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress

PLoS genetics, 2010-12, Vol.6 (12), p.e1001247-e1001247

2010

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Oxidation of phosphorothioate DNA modifications leads to lethal genomic instability

Nature chemical biology, 2017-08, Vol.13 (8), p.888-894

2017

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Nick-seq for single-nucleotide resolution genomic maps of DNA modifications and damage

Nucleic acids research, 2020-07, Vol.48 (12), p.6715-6725

2020

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Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences

Nature communications, 2014-06, Vol.5 (1), p.3951-3951, Article 3951

2014

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Discovery adductomics provides a comprehensive portrait of tissue-, age- and sex-specific DNA modifications in rodents and humans

Nucleic acids research, 2023-11, Vol.51 (20), p.10829-10845

2023

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Quantitative mapping of the cellular small RNA landscape with AQRNA-seq

Nature biotechnology, 2021-08, Vol.39 (8), p.978-988

2021

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Highly Predictive Reprogramming of tRNA Modifications Is Linked to Selective Expression of Codon-Biased Genes

Chemical research in toxicology, 2015-05, Vol.28 (5), p.978-988

2015

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Loss of Elongator- and KEOPS-Dependent tRNA Modifications Leads to Severe Growth Phenotypes and Protein Aggregation in Yeast

Biomolecules (Basel, Switzerland), 2020-02, Vol.10 (2), p.322

2020

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DNA phosphorothioation is widespread and quantized in bacterial genomes

Proceedings of the National Academy of Sciences - PNAS, 2011-02, Vol.108 (7), p.2963-2968

2011

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Development of Methods Derived from Iodine-Induced Specific Cleavage for Identification and Quantitation of DNA Phosphorothioate Modifications

Biomolecules (Basel, Switzerland), 2020-10, Vol.10 (11), p.1491

2020

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Strategies to Avoid Artifacts in Mass Spectrometry‐Based Epitranscriptome Analyses

Angewandte Chemie International Edition, 2021-10, Vol.60 (44), p.23885-23893

International ed. in English, 2021

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Nanopore Sequencing for Detection and Characterization of Phosphorothioate Modifications in Native DNA Sequences

Frontiers in microbiology, 2022-04, Vol.13, p.871937-871937

2022

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Methylation at position 32 of tRNA catalyzed by TrmJ alters oxidative stress response in Pseudomonas aeruginosa

Nucleic acids research, 2016-12, Vol.44 (22), p.10834-10848

2016

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Pathological phenotypes and in vivo DNA cleavage by unrestrained activity of a phosphorothioate‐based restriction system in Salmonella

Molecular microbiology, 2014-08, Vol.93 (4), p.776-785

2014

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Pathological phenotypes and in vivoDNA cleavage by unrestrained activity of a phosphorothioate-based restriction system in Salmonella

Molecular microbiology, 2014-08, Vol.93 (4), p.776-785

2014

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Screening of the PA14NR Transposon Mutant Library Identifies Genes Involved in Resistance to Bacteriophage Infection in Pseudomomas aeruginosa

International journal of molecular sciences, 2024-06, Vol.25 (13), p.7009

2024

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Quantification of the 2-Deoxyribonolactone and Nucleoside 5′-Aldehyde Products of 2-Deoxyribose Oxidation in DNA and Cells by Isotope-Dilution Gas Chromatography Mass Spectrometry: Differential Effects of γ-Radiation and Fe2+−EDTA

Journal of the American Chemical Society, 2010-05, Vol.132 (17), p.6145-6153

2010

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Crystal structure and catalytic mechanism of the essential m1G37 tRNA methyltransferase TrmD from Pseudomonas aeruginosa

RNA (Cambridge), 2019-11, Vol.25 (11), p.1481-1496

2019

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Crystal structure and catalytic mechanism of the essential m 1 G37 tRNA methyltransferase TrmD from Pseudomonas aeruginosa

RNA (Cambridge), 2019-11, Vol.25 (11), p.1481-1496

2019

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Dynamics and diversions in base excision DNA repair of oxidized abasic lesions

Oncogene, 2002-12, Vol.21 (58), p.8926-8934

2002

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Mycobacterial RNA isolation optimized for non-coding RNA: high fidelity isolation of 5S rRNA from Mycobacterium bovis BCG reveals novel post-transcriptional processing and a complete spectrum of modified ribonucleosides

Nucleic acids research, 2015-03, Vol.43 (5), p.e32-e32

2015

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DNA Sequence Context as a Determinant of the Quantity and Chemistry of Guanine Oxidation Produced by Hydroxyl Radicals and One-electron Oxidants

The Journal of biological chemistry, 2008-12, Vol.283 (51), p.35569-35578

2008

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In Situ Analysis of 8‑Oxo-7,8-dihydro-2′-deoxyguanosine Oxidation Reveals Sequence- and Agent-Specific Damage Spectra

Journal of the American Chemical Society, 2012-10, Vol.134 (43), p.18053-18064

2012

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The road less traveled: A new phosphorothioate antiviral defense mechanism discovered in Archaea

Synthetic and systems biotechnology, 2019-09, Vol.4 (3), p.132-133

2019

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Long-patch Base Excision DNA Repair of 2-Deoxyribonolactone Prevents the Formation of DNA-Protein Cross-links with DNA Polymerase β

The Journal of biological chemistry, 2005-11, Vol.280 (47), p.39095-39103

2005

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A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress

Oxidation of phosphorothioate DNA modifications leads to lethal genomic instability

Nick-seq for single-nucleotide resolution genomic maps of DNA modifications and damage

Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences

Discovery adductomics provides a comprehensive portrait of tissue-, age- and sex-specific DNA modifications in rodents and humans

Quantitative mapping of the cellular small RNA landscape with AQRNA-seq

Highly Predictive Reprogramming of tRNA Modifications Is Linked to Selective Expression of Codon-Biased Genes

Loss of Elongator- and KEOPS-Dependent tRNA Modifications Leads to Severe Growth Phenotypes and Protein Aggregation in Yeast

DNA phosphorothioation is widespread and quantized in bacterial genomes

Development of Methods Derived from Iodine-Induced Specific Cleavage for Identification and Quantitation of DNA Phosphorothioate Modifications

Strategies to Avoid Artifacts in Mass Spectrometry‐Based Epitranscriptome Analyses

Nanopore Sequencing for Detection and Characterization of Phosphorothioate Modifications in Native DNA Sequences

Methylation at position 32 of tRNA catalyzed by TrmJ alters oxidative stress response in Pseudomonas aeruginosa

Pathological phenotypes and in vivo DNA cleavage by unrestrained activity of a phosphorothioate‐based restriction system in Salmonella

Pathological phenotypes and in vivoDNA cleavage by unrestrained activity of a phosphorothioate-based restriction system in Salmonella

Screening of the PA14NR Transposon Mutant Library Identifies Genes Involved in Resistance to Bacteriophage Infection in Pseudomomas aeruginosa

Quantification of the 2-Deoxyribonolactone and Nucleoside 5′-Aldehyde Products of 2-Deoxyribose Oxidation in DNA and Cells by Isotope-Dilution Gas Chromatography Mass Spectrometry: Differential Effects of γ-Radiation and Fe2+−EDTA

Crystal structure and catalytic mechanism of the essential m1G37 tRNA methyltransferase TrmD from Pseudomonas aeruginosa

Crystal structure and catalytic mechanism of the essential m 1 G37 tRNA methyltransferase TrmD from Pseudomonas aeruginosa

Dynamics and diversions in base excision DNA repair of oxidized abasic lesions

Mycobacterial RNA isolation optimized for non-coding RNA: high fidelity isolation of 5S rRNA from Mycobacterium bovis BCG reveals novel post-transcriptional processing and a complete spectrum of modified ribonucleosides

DNA Sequence Context as a Determinant of the Quantity and Chemistry of Guanine Oxidation Produced by Hydroxyl Radicals and One-electron Oxidants

In Situ Analysis of 8‑Oxo-7,8-dihydro-2′-deoxyguanosine Oxidation Reveals Sequence- and Agent-Specific Damage Spectra

The road less traveled: A new phosphorothioate antiviral defense mechanism discovered in Archaea

Long-patch Base Excision DNA Repair of 2-Deoxyribonolactone Prevents the Formation of DNA-Protein Cross-links with DNA Polymerase β

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