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Improved whole-chromosome phasing for disease and population genetic studies

Nature methods, 2013-01, Vol.10 (1), p.5-6

2013

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A linear complexity phasing method for thousands of genomes

Nature methods, 2012-02, Vol.9 (2), p.179-181

2012

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Genotype imputation using the Positional Burrows Wheeler Transform

PLoS genetics, 2020-11, Vol.16 (11), p.e1009049-e1009049

2020

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Fast and efficient QTL mapper for thousands of molecular phenotypes

Bioinformatics, 2016-05, Vol.32 (10), p.1479-1485

2016

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Accurate, scalable and integrative haplotype estimation

Nature communications, 2019-11, Vol.10 (1), p.5436-10, Article 5436

2019

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A complete tool set for molecular QTL discovery and analysis

Nature communications, 2017-05, Vol.8 (1), p.15452-15452, Article 15452

2017

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Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome

Nature communications, 2021-09, Vol.12 (1), p.5647-9, Article 5647

2021

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The molecular basis, genetic control and pleiotropic effects of local gene co-expression

Nature communications, 2021-08, Vol.12 (1), p.4842-4842, Article 4842

2021

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Estimating the causal tissues for complex traits and diseases

Nature genetics, 2017-12, Vol.49 (12), p.1676-1683

2017

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Improving population scale statistical phasing with whole-genome sequencing data

PLoS genetics, 2024-07, Vol.20 (7), p.e1011092

2024

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Expression estimation and eQTL mapping for HLA genes with a personalized pipeline

PLoS genetics, 2019-04, Vol.15 (4), p.e1008091-e1008091

2019

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Population Variation and Genetic Control of Modular Chromatin Architecture in Humans

Cell, 2015-08, Vol.162 (5), p.1039-1050

2015

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Parent-of-Origin inference for biobanks

Nature communications, 2022-11, Vol.13 (1), p.6668-15, Article 6668

2022

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Assessing the impact of post-mortem damage and contamination on imputation performance in ancient DNA

Scientific reports, 2024-03, Vol.14 (1), p.6227-6227, Article 6227

2024

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Imputation of ancient human genomes

Nature communications, 2023-06, Vol.14 (1), p.3660-17, Article 3660

2023

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Gene regulation contributes to explain the impact of early life socioeconomic disadvantage on adult inflammatory levels in two cohort studies

Scientific reports, 2021-02, Vol.11 (1), p.3100-3100, Article 3100

2021

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The effect of genetic variation on promoter usage and enhancer activity

Nature communications, 2017-11, Vol.8 (1), p.1358-9, Article 1358

2017

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Shape-IT: new rapid and accurate algorithm for haplotype inference

BMC bioinformatics, 2008-12, Vol.9 (1), p.540-540, Article 540

2008

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MBV: a method to solve sample mislabeling and detect technical bias in large combined genotype and sequencing assay datasets

Bioinformatics (Oxford, England), 2017-06, Vol.33 (12), p.1895-1897

2017

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Biased Allelic Expression in Human Primary Fibroblast Single Cells

American journal of human genetics, 2015-01, Vol.96 (1), p.70-80

2015

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Shared regulation and functional relevance of local gene co-expression revealed by single cell analysis

Communications biology, 2022-08, Vol.5 (1), p.876-876, Article 876

2022

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CD39/adenosine pathway is involved in AIDS progression

PLoS pathogens, 2011-07, Vol.7 (7), p.e1002110-e1002110

2011

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Multimodal single cell analysis infers widespread enhancer co-activity in a lymphoblastoid cell line

Communications biology, 2023-05, Vol.6 (1), p.563-9, Article 563

2023

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The HLA-B57:01 allele corresponds to a very large MHC haploblock likely explaining its massive effect for HIV-1 elite control

Frontiers in immunology, 2023-12, Vol.14, p.1305856-1305856

2023

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Improved whole-chromosome phasing for disease and population genetic studies

A linear complexity phasing method for thousands of genomes

Genotype imputation using the Positional Burrows Wheeler Transform

Fast and efficient QTL mapper for thousands of molecular phenotypes

Accurate, scalable and integrative haplotype estimation

A complete tool set for molecular QTL discovery and analysis

Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome

The molecular basis, genetic control and pleiotropic effects of local gene co-expression

Estimating the causal tissues for complex traits and diseases

Improving population scale statistical phasing with whole-genome sequencing data

A genome-wide association study of shared risk across psychiatric disorders implicates gene regulation during fetal neurodevelopment

Expression estimation and eQTL mapping for HLA genes with a personalized pipeline

Population Variation and Genetic Control of Modular Chromatin Architecture in Humans

Parent-of-Origin inference for biobanks

Assessing the impact of post-mortem damage and contamination on imputation performance in ancient DNA

Imputation of ancient human genomes

Gene regulation contributes to explain the impact of early life socioeconomic disadvantage on adult inflammatory levels in two cohort studies

The effect of genetic variation on promoter usage and enhancer activity

Shape-IT: new rapid and accurate algorithm for haplotype inference

MBV: a method to solve sample mislabeling and detect technical bias in large combined genotype and sequencing assay datasets

Biased Allelic Expression in Human Primary Fibroblast Single Cells

Shared regulation and functional relevance of local gene co-expression revealed by single cell analysis

CD39/adenosine pathway is involved in AIDS progression

Multimodal single cell analysis infers widespread enhancer co-activity in a lymphoblastoid cell line

The HLA-B57:01 allele corresponds to a very large MHC haploblock likely explaining its massive effect for HIV-1 elite control

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