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Modeling Hybridization Under the Network Multispecies Coalescent

Systematic biology, 2018-09, Vol.67 (5), p.786-799

2018

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The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection

PLoS genetics, 2012-04, Vol.8 (4), p.e1002660-e1002660

2012

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Discordance of species trees with their most likely gene trees

PLoS genetics, 2006-05, Vol.2 (5), p.e68-e68

2006

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Gene tree discordance, phylogenetic inference and the multispecies coalescent

Trends in ecology & evolution (Amsterdam), 2009-06, Vol.24 (6), p.332-340

2009

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Inconsistency of Phylogenetic Estimates from Concatenated Data under Coalescence

Systematic biology, 2007-02, Vol.56 (1), p.17-24

2007

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Trying out a million genes to find the perfect pair with RTIST

Bioinformatics (Oxford, England), 2022-07, Vol.38 (14), p.3565-3573

2022

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Anomalous Unrooted Gene Trees

Systematic biology, 2013-07, Vol.62 (4), p.574-590

Degnan, James H.

2013

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PRANC: ML species tree estimation from the ranked gene trees under coalescence

Bioinformatics, 2020-09, Vol.36 (18), p.4819-4821

2020

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Displayed Trees Do Not Determine Distinguishability Under the Network Multispecies Coalescent

Systematic biology, 2017-03, Vol.66 (2), p.283-298

2017

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Meng and Kubatko (2009): Modeling hybridization with coalescence

Theoretical population biology, 2020-06, Vol.133, p.36-37

Degnan, James H.

2020

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Heuristics for unrooted, unranked, and ranked anomaly zones under birth-death models

Molecular phylogenetics and evolution, 2021-08, Vol.161, p.107162-107162, Article 107162

2021

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Correction: Statistical inconsistency of the unrooted minimize deep coalescence criterion

PloS one, 2021-08, Vol.16 (8), p.e0256189-e0256189

2021

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Coalescent Histories on Phylogenetic Networks and Detection of Hybridization Despite Incomplete Lineage Sorting

Systematic biology, 2011-03, Vol.60 (2), p.138-149

2011

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The relation of geogenic contaminants to groundwater age, aquifer hydrologic position, water type, and redox conditions in Atlantic and Gulf Coastal Plain aquifers, eastern and south-central USA

The Science of the total environment, 2020-06, Vol.723, p.137835-137835, Article 137835

2020

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Robustness to Divergence Time Underestimation When Inferring Species Trees from Estimated Gene Trees

Systematic biology, 2014-01, Vol.63 (1), p.66-82

2014

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Statistical inconsistency of the unrooted minimize deep coalescence criterion

PloS one, 2021-05, Vol.16 (5), p.e0251107-e0251107

2021

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Species Tree Inference from Gene Splits by Unrooted STAR Methods

IEEE/ACM transactions on computational biology and bioinformatics, 2018-01, Vol.15 (1), p.337-342

2018

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Probabilities of Unranked and Ranked Anomaly Zones under Birth–Death Models

Molecular biology and evolution, 2020-05, Vol.37 (5), p.1480-1494

2020

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Properties of Consensus Methods for Inferring Species Trees from Gene Trees

Systematic biology, 2009-02, Vol.58 (1), p.35-54

2009

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Fast and Consistent Estimation of Species Trees Using Supermatrix Rooted Triples

Molecular biology and evolution, 2010-03, Vol.27 (3), p.552-569

2010

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Hybrid-Lambda: simulation of multiple merger and Kingman gene genealogies in species networks and species trees

BMC bioinformatics, 2015-09, Vol.16 (1), p.292-292, Article 292

2015

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The onset of rare earth metallosis begins with renal gadolinium-rich nanoparticles from magnetic resonance imaging contrast agent exposure

Scientific reports, 2023-02, Vol.13 (1), p.2025-16, Article 2025

2023

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Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent

Journal of mathematical biology, 2011-06, Vol.62 (6), p.833-862

2011

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GENE TREE DISTRIBUTIONS UNDER THE COALESCENT PROCESS

Evolution, 2005-01, Vol.59 (1), p.24-37

2005

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An initiative to implement immediate postpartum long-acting reversible contraception in rural New Mexico

American journal of obstetrics and gynecology, 2020-04, Vol.222 (4), p.S911.e1-S911.e7

2020

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Modeling Hybridization Under the Network Multispecies Coalescent

The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection

Discordance of species trees with their most likely gene trees

Gene tree discordance, phylogenetic inference and the multispecies coalescent

Inconsistency of Phylogenetic Estimates from Concatenated Data under Coalescence

Trying out a million genes to find the perfect pair with RTIST

Anomalous Unrooted Gene Trees

PRANC: ML species tree estimation from the ranked gene trees under coalescence

Displayed Trees Do Not Determine Distinguishability Under the Network Multispecies Coalescent

Meng and Kubatko (2009): Modeling hybridization with coalescence

Heuristics for unrooted, unranked, and ranked anomaly zones under birth-death models

Correction: Statistical inconsistency of the unrooted minimize deep coalescence criterion

Coalescent Histories on Phylogenetic Networks and Detection of Hybridization Despite Incomplete Lineage Sorting

The relation of geogenic contaminants to groundwater age, aquifer hydrologic position, water type, and redox conditions in Atlantic and Gulf Coastal Plain aquifers, eastern and south-central USA

Robustness to Divergence Time Underestimation When Inferring Species Trees from Estimated Gene Trees

Statistical inconsistency of the unrooted minimize deep coalescence criterion

Species Tree Inference from Gene Splits by Unrooted STAR Methods

Probabilities of Unranked and Ranked Anomaly Zones under Birth–Death Models

Properties of Consensus Methods for Inferring Species Trees from Gene Trees

Fast and Consistent Estimation of Species Trees Using Supermatrix Rooted Triples

Hybrid-Lambda: simulation of multiple merger and Kingman gene genealogies in species networks and species trees

The onset of rare earth metallosis begins with renal gadolinium-rich nanoparticles from magnetic resonance imaging contrast agent exposure

Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent

GENE TREE DISTRIBUTIONS UNDER THE COALESCENT PROCESS

An initiative to implement immediate postpartum long-acting reversible contraception in rural New Mexico

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