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Coupling Molecular Dynamics and Deep Learning to Mine Protein Conformational Space

Structure (London), 2019-06, Vol.27 (6), p.1034-1040.e3

Degiacomi, Matteo T.

2019

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Collision Cross Sections for Structural Proteomics

Structure (London), 2015-04, Vol.23 (4), p.791-799

2015

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Mineral surface chemistry control for origin of prebiotic peptides

Nature communications, 2017-12, Vol.8 (1), p.2033-9, Article 2033

2017

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A subset of annular lipids is linked to the flippase activity of an ABC transporter

Nature chemistry, 2015-03, Vol.7 (3), p.255-262

2015

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Molecular assembly of the aerolysin pore reveals a swirling membrane-insertion mechanism

Nature chemical biology, 2013-10, Vol.9 (10), p.623-629

2013

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Accommodating Protein Dynamics in the Modeling of Chemical Crosslinks

Structure (London), 2017-11, Vol.25 (11), p.1751-1757.e5

2017

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Macromolecular Symmetric Assembly Prediction Using Swarm Intelligence Dynamic Modeling

Structure (London), 2013-07, Vol.21 (7), p.1097-1106

2013

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Deep Learning Protein Conformational Space with Convolutions and Latent Interpolations

Physical review. X, 2021-03, Vol.11 (1), p.011052, Article 011052

2021

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Integrating mass spectrometry with MD simulations reveals the role of lipids in Na + /H + antiporters

Nature communications, 2017-01, Vol.8 (1), p.13993-13993, Article 13993

2017

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Computational Strategies and Challenges for Using Native Ion Mobility Mass Spectrometry in Biophysics and Structural Biology

Analytical chemistry (Washington), 2020-08, Vol.92 (16), p.10872-10880

2020

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Automatic Assignment of Methyl-NMR Spectra of Supramolecular Machines Using Graph Theory

Journal of the American Chemical Society, 2017-07, Vol.139 (28), p.9523-9533

2017

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The epilepsy-associated protein TBC1D24 is required for normal development, survival and vesicle trafficking in mammalian neurons

Human molecular genetics, 2019-02, Vol.28 (4), p.584-597

2019

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Software Requirements for the Analysis and Interpretation of Native Ion Mobility Mass Spectrometry Data

Analytical chemistry (Washington), 2020-08, Vol.92 (16), p.10881-10890

2020

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Dual chaperone role of the C-terminal propeptide in folding and oligomerization of the pore-forming toxin aerolysin

PLoS pathogens, 2011-07, Vol.7 (7), p.e1002135-e1002135

2011

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Understanding surface interactions in aqueous miscible organic solvent treated layered double hydroxides

RSC advances, 2017-01, Vol.7 (9), p.576-583

2017

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Allophycocyanin A is a carbon dioxide receptor in the cyanobacterial phycobilisome

Nature communications, 2022-09, Vol.13 (1), p.5289-5289, Article 5289

2022

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On the Effect of Sphere-Overlap on Super Coarse-Grained Models of Protein Assemblies

Journal of the American Society for Mass Spectrometry, 2019-01, Vol.30 (1), p.113-117

Degiacomi, Matteo T.

2019

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Membrane proteins bind lipids selectively to modulate their structure and function

Nature (London), 2014-06, Vol.510 (7503), p.172-175

2014

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In situ structural analysis of the Yersinia enterocolitica injectisome

eLife, 2013-07, Vol.2, p.e00792-e00792

2013

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Electrostatic-Consistent Coarse-Grained Potentials for Molecular Simulations of Proteins

Journal of chemical theory and computation, 2013-08, Vol.9 (8), p.3515-3526

2013

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Disentangling constraints using viability evolution principles in integrative modeling of macromolecular assemblies

Scientific reports, 2017-03, Vol.7 (1), p.235-235, Article 235

2017

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Ca2+-dependent lipid preferences shape synaptotagmin-1 C2A and C2B dynamics: Insights from experiments and simulations

Structure (London), 2024-10, Vol.32 (10), p.1691-1704.e5

2024

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Identification of Graphene Dispersion Agents through Molecular Fingerprints

ACS nano, 2022-10, Vol.16 (10), p.16109-16117

2022

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Dimer interface of bovine cytochrome c oxidase is influenced by local posttranslational modifications and lipid binding

Proceedings of the National Academy of Sciences - PNAS, 2016-07, Vol.113 (29), p.8230-8235

2016

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Cryo‐EM structure of the octameric pore of Clostridium perfringens β‐toxin

EMBO reports, 2022-12, Vol.23 (12), p.e54856-n/a

2022

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Coupling Molecular Dynamics and Deep Learning to Mine Protein Conformational Space

Collision Cross Sections for Structural Proteomics

Mineral surface chemistry control for origin of prebiotic peptides

A subset of annular lipids is linked to the flippase activity of an ABC transporter

Molecular assembly of the aerolysin pore reveals a swirling membrane-insertion mechanism

Accommodating Protein Dynamics in the Modeling of Chemical Crosslinks

Macromolecular Symmetric Assembly Prediction Using Swarm Intelligence Dynamic Modeling

Deep Learning Protein Conformational Space with Convolutions and Latent Interpolations

Integrating mass spectrometry with MD simulations reveals the role of lipids in Na + /H + antiporters

Computational Strategies and Challenges for Using Native Ion Mobility Mass Spectrometry in Biophysics and Structural Biology

Automatic Assignment of Methyl-NMR Spectra of Supramolecular Machines Using Graph Theory

The epilepsy-associated protein TBC1D24 is required for normal development, survival and vesicle trafficking in mammalian neurons

Software Requirements for the Analysis and Interpretation of Native Ion Mobility Mass Spectrometry Data

Dual chaperone role of the C-terminal propeptide in folding and oligomerization of the pore-forming toxin aerolysin

Understanding surface interactions in aqueous miscible organic solvent treated layered double hydroxides

Allophycocyanin A is a carbon dioxide receptor in the cyanobacterial phycobilisome

On the Effect of Sphere-Overlap on Super Coarse-Grained Models of Protein Assemblies

Membrane proteins bind lipids selectively to modulate their structure and function

In situ structural analysis of the Yersinia enterocolitica injectisome

Electrostatic-Consistent Coarse-Grained Potentials for Molecular Simulations of Proteins

Disentangling constraints using viability evolution principles in integrative modeling of macromolecular assemblies

Ca2+-dependent lipid preferences shape synaptotagmin-1 C2A and C2B dynamics: Insights from experiments and simulations

Identification of Graphene Dispersion Agents through Molecular Fingerprints

Dimer interface of bovine cytochrome c oxidase is influenced by local posttranslational modifications and lipid binding

Cryo‐EM structure of the octameric pore of Clostridium perfringens β‐toxin

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