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CoV-AbDab: the coronavirus antibody database

Bioinformatics, 2021-05, Vol.37 (5), p.734-735

2021

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Avoiding False Positive Conclusions in Molecular Simulation: The Importance of Replicas

Journal of chemical theory and computation, 2018-12, Vol.14 (12), p.6127-6138

2018

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ANARCI: antigen receptor numbering and receptor classification

Bioinformatics (Oxford, England), 2016-01, Vol.32 (2), p.298-300

2016

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How repertoire data are changing antibody science

The Journal of biological chemistry, 2020-07, Vol.295 (29), p.9823-9837

2020

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Humanization of antibodies using a machine learning approach on large-scale repertoire data

Bioinformatics (Oxford, England), 2021-11, Vol.37 (22), p.4041-4047

2021

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SAbDab in the age of biotherapeutics: updates including SAbDab-nano, the nanobody structure tracker

Nucleic acids research, 2022-01, Vol.50 (D1), p.D1368-D1372

2022

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Learning from the ligand: using ligand-based features to improve binding affinity prediction

Bioinformatics, 2020-02, Vol.36 (3), p.758-764

2020

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Observed Antibody Space: A Resource for Data Mining Next-Generation Sequencing of Antibody Repertoires

The Journal of immunology (1950), 2018-10, Vol.201 (8), p.2502-2509

2018

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Five computational developability guidelines for therapeutic antibody profiling

Proceedings of the National Academy of Sciences - PNAS, 2019-03, Vol.116 (10), p.4025-4030

2019

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Protein Family-Specific Models Using Deep Neural Networks and Transfer Learning Improve Virtual Screening and Highlight the Need for More Data

Journal of chemical information and modeling, 2018-11, Vol.58 (11), p.2319-2330

2018

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The prospects of quantum computing in computational molecular biology

Wiley interdisciplinary reviews. Computational molecular science, 2021-01, Vol.11 (1), p.e1481-n/a

2021

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The H3 loop of antibodies shows unique structural characteristics

Proteins, structure, function, and bioinformatics, 2017-07, Vol.85 (7), p.1311-1318

2017

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Improving B-cell epitope prediction and its application to global antibody-antigen docking

Bioinformatics (Oxford, England), 2014-08, Vol.30 (16), p.2288-2294

2014

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Specific attributes of the VL domain influence both the structure and structural variability of CDR-H3 through steric effects

Frontiers in immunology, 2023-07, Vol.14, p.1223802-1223802

2023

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FREAD revisited: Accurate loop structure prediction using a database search algorithm

Proteins, structure, function, and bioinformatics, 2010-05, Vol.78 (6), p.1431-1440

2010

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A multi-crystal method for extracting obscured crystallographic states from conventionally uninterpretable electron density

Nature communications, 2017-04, Vol.8 (1), p.15123-15123, Article 15123

2017

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Thera-SAbDab: the Therapeutic Structural Antibody Database

Nucleic acids research, 2020-01, Vol.48 (D1), p.D383-D388

2020

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SAbPred: a structure-based antibody prediction server

Nucleic acids research, 2016-07, Vol.44 (W1), p.W474-W478

2016

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ImmuneBuilder: Deep-Learning models for predicting the structures of immune proteins

Communications biology, 2023-05, Vol.6 (1), p.575-575, Article 575

2023

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Public Baseline and shared response structures support the theory of antibody repertoire functional commonality

PLoS computational biology, 2021-03, Vol.17 (3), p.e1008781-e1008781

2021

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Investigating the ability of deep learning-based structure prediction to extrapolate and/or enrich the set of antibody CDR canonical forms

Frontiers in immunology, 2024-02, Vol.15, p.1352703

2024

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Comparative Analysis of the CDR Loops of Antigen Receptors

Frontiers in immunology, 2019-10, Vol.10, p.2454-2454

2019

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PLAbDab-nano: a database of camelid and shark nanobodies from patents and literature

Nucleic acids research, 2024-10

2024

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Epitope profiling using computational structural modelling demonstrated on coronavirus-binding antibodies

PLoS computational biology, 2021-12, Vol.17 (12), p.e1009675-e1009675

2021

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Measuring rank robustness in scored protein interaction networks

BMC bioinformatics, 2019-08, Vol.20 (1), p.446-446, Article 446

2019

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CoV-AbDab: the coronavirus antibody database

Avoiding False Positive Conclusions in Molecular Simulation: The Importance of Replicas

ANARCI: antigen receptor numbering and receptor classification

How repertoire data are changing antibody science

Humanization of antibodies using a machine learning approach on large-scale repertoire data

SAbDab in the age of biotherapeutics: updates including SAbDab-nano, the nanobody structure tracker

Learning from the ligand: using ligand-based features to improve binding affinity prediction

Observed Antibody Space: A Resource for Data Mining Next-Generation Sequencing of Antibody Repertoires

Five computational developability guidelines for therapeutic antibody profiling

Protein Family-Specific Models Using Deep Neural Networks and Transfer Learning Improve Virtual Screening and Highlight the Need for More Data

The prospects of quantum computing in computational molecular biology

The H3 loop of antibodies shows unique structural characteristics

Improving B-cell epitope prediction and its application to global antibody-antigen docking

Specific attributes of the VL domain influence both the structure and structural variability of CDR-H3 through steric effects

FREAD revisited: Accurate loop structure prediction using a database search algorithm

A multi-crystal method for extracting obscured crystallographic states from conventionally uninterpretable electron density

Thera-SAbDab: the Therapeutic Structural Antibody Database

SAbPred: a structure-based antibody prediction server

ImmuneBuilder: Deep-Learning models for predicting the structures of immune proteins

Public Baseline and shared response structures support the theory of antibody repertoire functional commonality

Investigating the ability of deep learning-based structure prediction to extrapolate and/or enrich the set of antibody CDR canonical forms

Comparative Analysis of the CDR Loops of Antigen Receptors

PLAbDab-nano: a database of camelid and shark nanobodies from patents and literature

Epitope profiling using computational structural modelling demonstrated on coronavirus-binding antibodies

Measuring rank robustness in scored protein interaction networks

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