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Protein−Nucleic Acid Interactions during Open Complex Formation Investigated by Systematic Alteration of the Protein and DNA Binding Partners

Biochemistry (Easton), 1999-05, Vol.38 (19), p.5959-5967

1999

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RNA polymerase-promoter interactions: the comings and goings of RNA polymerase

Journal of bacteriology, 1998-06, Vol.180 (12), p.3019-3025

1998

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Sigma 32-Dependent Promoter Activity In Vivo: Sequence Determinants of the groE Promoter

Journal of Bacteriology, 2003-10, Vol.185 (19), p.5800-5806

2003

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Different roles for basic and aromatic amino acids in conserved region 2 of Escherichia coli sigma(70) in the nucleation and maintenance of the single-stranded DNA bubble in open RNA polymerase-promoter complexes

The Journal of biological chemistry, 2001-08, Vol.276 (34), p.31891

2001

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Green fluorescent protein as a quantitative reporter of relative promoter activity in E. coli

BioTechniques, 2000, Vol.28 (1), p.82-89

2000

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Open complex formation by Escherichia coli RNA polymerase: the mechanism of polymerase‐induced strand separation of double helical DNA

Molecular microbiology, 1995-06, Vol.16 (5), p.817-824

1995

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Interaction of RNA Polymerase with Forked DNA: Evidence for Two Kinetically Significant Intermediates on the Pathway to the Final Complex

Proceedings of the National Academy of Sciences - PNAS, 2002-03, Vol.99 (6), p.3493-3498

2002

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RNA Polymerase Alters the Mobility of an A-Residue Crucial to Polymerase-Induced Melting of Promoter DNA

Biochemistry (Easton), 2002-12, Vol.41 (51), p.15334-15341

2002

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An RNA Polymerase Mutant Deficient in DNA Melting Facilitates Study of Activation Mechanism: Application to an Artificial Activator of Transcription

Journal of molecular biology, 2004-11, Vol.343 (5), p.1171-1182

2004

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Evidence for a Tyrosine–Adenine Stacking Interaction and for a Short-lived Open Intermediate Subsequent to Initial Binding of Escherichia coli RNA Polymerase to Promoter DNA

Journal of molecular biology, 2009-01, Vol.385 (2), p.339-349

2009

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A mismatch bubble in double-stranded DNA suffices to direct precise transcription initiation by Escherichia coli RNA polymerase

The Journal of biological chemistry, 1994-05, Vol.269 (18), p.13179-13184

1994

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Promoter recognition by Escherichia coli RNA polymerase. Effects of single base pair deletions and insertions in the spacer DNA separating the -10 and -35 regions are dependent on spacer DNA sequence

Biochemistry (Easton), 1993-06, Vol.32 (24), p.6134-6140

1993

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Promoter Recognition by Escherichia coli RNA Polymerase: Effects of the UP Element on Open Complex Formation and Promoter Clearance

Biochemistry (Easton), 1998-12, Vol.37 (51), p.18074-18080

1998

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Equilibrium and Kinetic Parameters of the Sequence-Specific Interaction of Escherichia coli RNA Polymerase with Nontemplate Strand Oligodeoxyribonucleotides

Biochemistry (Easton), 1998-08, Vol.37 (34), p.11971-11979

1998

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Promoter Interference in a Bacteriophage Lambda Control Region: Effects of a Range of Interpromoter Distances

Journal of Bacteriology, 2000-01, Vol.182 (1), p.216-220

2000

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Spectroscopic Determination of Open Complex Formation at Promoters for Escherichia coli RNA Polymerase

Biochemistry (Easton), 1997-07, Vol.36 (26), p.8005-8012

1997

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Saturation mutagenesis of an Escherichia coli rRNA promoter and initial characterization of promoter variants

Journal of Bacteriology, 1989-09, Vol.171 (9), p.4852-4861

1989

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Promoter recognition by Escherichia coli RNA polymerase : Role of the spacer DNA in functional complex formation

Journal of molecular biology, 1989-06, Vol.207 (4), p.749-756

1989

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Interference by PR-bound RNA polymerase with PRM function in vitro. Modulation by the bacteriophage lambda cI protein

The Journal of biological chemistry, 1993-04, Vol.268 (12), p.8943-8948

1993

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Identification of promoter mutants defective in growth-rate-dependent regulation of rRNA transcription in Escherichia coli

Journal of Bacteriology, 1989-09, Vol.171 (9), p.4862-4870

1989

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Promoter recognition by Escherichia coli RNA polymerase. Effects of substitutions in the spacer DNA separating the -10 and -35 regions

The Journal of biological chemistry, 1986-08, Vol.261 (24), p.11202-11206

1986

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New Start Site for Escherichia coli RNA Polymerase at an Engineered Short Region of Non-complementarity in Double-stranded DNA

Journal of molecular biology, 1993, Vol.233 (3), p.349-358

1993

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Promoter recognition by Escherichia coli RNA polymerase : Influence of DNA structure in the spacer separating the −10 and −35 regions

Journal of molecular biology, 1988-08, Vol.202 (3), p.471-482

1988

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The -11A of promoter DNA and two conserved amino acids in the melting region of 70 both directly affect the rate limiting step in formation of the stable RNA polymerase-promoter complex, but they do not necessarily interact

Nucleic acids research, 2007-06, Vol.35 (12), p.4141-4153

2007

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Threonine 429 of Escherichia coli s super(7) super(0) is a Key Participant in Promoter DNA Melting by RNA Polymerase

Journal of molecular biology, 2008-02, Vol.376 (1), p.153-165

2008

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Protein−Nucleic Acid Interactions during Open Complex Formation Investigated by Systematic Alteration of the Protein and DNA Binding Partners

RNA polymerase-promoter interactions: the comings and goings of RNA polymerase

Sigma 32-Dependent Promoter Activity In Vivo: Sequence Determinants of the groE Promoter

Different roles for basic and aromatic amino acids in conserved region 2 of Escherichia coli sigma(70) in the nucleation and maintenance of the single-stranded DNA bubble in open RNA polymerase-promoter complexes

Green fluorescent protein as a quantitative reporter of relative promoter activity in E. coli

Open complex formation by Escherichia coli RNA polymerase: the mechanism of polymerase‐induced strand separation of double helical DNA

Interaction of RNA Polymerase with Forked DNA: Evidence for Two Kinetically Significant Intermediates on the Pathway to the Final Complex

RNA Polymerase Alters the Mobility of an A-Residue Crucial to Polymerase-Induced Melting of Promoter DNA

An RNA Polymerase Mutant Deficient in DNA Melting Facilitates Study of Activation Mechanism: Application to an Artificial Activator of Transcription

Evidence for a Tyrosine–Adenine Stacking Interaction and for a Short-lived Open Intermediate Subsequent to Initial Binding of Escherichia coli RNA Polymerase to Promoter DNA

A mismatch bubble in double-stranded DNA suffices to direct precise transcription initiation by Escherichia coli RNA polymerase

Promoter recognition by Escherichia coli RNA polymerase. Effects of single base pair deletions and insertions in the spacer DNA separating the -10 and -35 regions are dependent on spacer DNA sequence

Promoter Recognition by Escherichia coli RNA Polymerase: Effects of the UP Element on Open Complex Formation and Promoter Clearance

Equilibrium and Kinetic Parameters of the Sequence-Specific Interaction of Escherichia coli RNA Polymerase with Nontemplate Strand Oligodeoxyribonucleotides

Promoter Interference in a Bacteriophage Lambda Control Region: Effects of a Range of Interpromoter Distances

Spectroscopic Determination of Open Complex Formation at Promoters for Escherichia coli RNA Polymerase

Saturation mutagenesis of an Escherichia coli rRNA promoter and initial characterization of promoter variants

Promoter recognition by Escherichia coli RNA polymerase : Role of the spacer DNA in functional complex formation

Interference by PR-bound RNA polymerase with PRM function in vitro. Modulation by the bacteriophage lambda cI protein

Identification of promoter mutants defective in growth-rate-dependent regulation of rRNA transcription in Escherichia coli

Promoter recognition by Escherichia coli RNA polymerase. Effects of substitutions in the spacer DNA separating the -10 and -35 regions

New Start Site for Escherichia coli RNA Polymerase at an Engineered Short Region of Non-complementarity in Double-stranded DNA

Promoter recognition by Escherichia coli RNA polymerase : Influence of DNA structure in the spacer separating the −10 and −35 regions

The -11A of promoter DNA and two conserved amino acids in the melting region of 70 both directly affect the rate limiting step in formation of the stable RNA polymerase-promoter complex, but they do not necessarily interact

Threonine 429 of Escherichia coli s super(7) super(0) is a Key Participant in Promoter DNA Melting by RNA Polymerase

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