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Obesity: An Immunometabolic Perspective

Frontiers in endocrinology (Lausanne), 2016-12, Vol.7, p.157-157

2016

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Pattern Recognition and Machine Intelligence: 10th International Conference, PReMI 2023, Kolkata, India, December 12-15, 2023, Proceedings

1, 2023

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Comparing methods for metabolic network analysis and an application to metabolic engineering

Gene, 2013-05, Vol.521 (1), p.1-14

2013

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CNV-CH: A Convex Hull Based Segmentation Approach to Detect Copy Number Variations (CNV) Using Next-Generation Sequencing Data

PloS one, 2015-08, Vol.10 (8), p.e0135895-e0135895

2015

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In Silico Modeling of Crabtree Effect

Endocrine, metabolic & immune disorders drug targets, 2017-01, Vol.17 (3), p.182

2017

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Divisive Correlation Clustering Algorithm (DCCA) for grouping of genes: detecting varying patterns in expression profiles

Bioinformatics, 2008-06, Vol.24 (11), p.1359-1366

2008

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Exploring the Altered Dynamics of Mammalian Central Carbon Metabolic Pathway in Cancer Cells: A Classical Control Theoretic Approach

PloS one, 2015-09, Vol.10 (9), p.e0137728-e0137728

2015

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Unsupervised neural network for single cell Multi-omics INTegration (UMINT): an application to health and disease

Frontiers in molecular biosciences, 2023-05, Vol.10, p.1184748-1184748

2023

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A model of an integrated immune system pathway in Homo sapiens and its interaction with superantigen producing expression regulatory pathway in Staphylococcus aureus: comparing behavior of pathogen perturbed and unperturbed pathway

PloS one, 2013-12, Vol.8 (12), p.e80918-e80918

2013

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Estimating gene expression from DNA methylation and copy number variation: A deep learning regression model for multi-omics integration

Genomics (San Diego, Calif.), 2020-07, Vol.112 (4), p.2833-2841

2020

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A control theoretic three timescale model for analyzing energy management in mammalian cancer cells

Computational and structural biotechnology journal, 2021-01, Vol.19, p.477-508

2021

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Simulating an infection growth model in certain healthy metabolic pathways of Homo sapiens for highlighting their role in Type I Diabetes mellitus using fire-spread strategy, feedbacks and sensitivities

PloS one, 2013-09, Vol.8 (9), p.e69724-e69724

2013

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Catestatin improves insulin sensitivity by attenuating endoplasmic reticulum stress: In vivo and in silico validation

Computational and structural biotechnology journal, 2020-01, Vol.18, p.464-481

2020

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OCDD: an obesity and co-morbid disease database

BioData mining, 2017-11, Vol.10 (1), p.33-33, Article 33

2017

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Metabolic pathway engineering: Perspectives and applications

Computer methods and programs in biomedicine, 2020-08, Vol.192, p.105436-105436, Article 105436

2020

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MDSR-NMF: Multiple deconstruction single reconstruction deep neural network model for non-negative matrix factorization

Network (Bristol), 2023-10, Vol.34 (4), p.306-342

2023

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Immunoinformatics: an integrated scenario

Immunology, 2010-10, Vol.131 (2), p.153-168

2010

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GenSeg and MR-GenSeg: A Novel Segmentation Algorithm and its Parallel MapReduce Based Approach for Identifying Genomic Regions With Copy Number Variations

IEEE/ACM transactions on computational biology and bioinformatics, 2022-01, Vol.19 (1), p.443-454

2022

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Block Search Stochastic Simulation Algorithm (BlSSSA): A Fast Stochastic Simulation Algorithm for Modeling Large Biochemical Networks

IEEE/ACM transactions on computational biology and bioinformatics, 2022-07, Vol.19 (4), p.2111-2123

2022

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ENLIGHTENMENT: A Scalable Annotated Database of Genomics and NGS-Based Nucleotide Level Profiles

IEEE/ACM transactions on computational biology and bioinformatics, 2024-01, Vol.21 (1), p.155-168

2024

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Gradient descent optimization in gene regulatory pathways

PloS one, 2010-09, Vol.5 (9), p.e12475

2010

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CASSL: A cell-type annotation method for single cell transcriptomics data using semi-supervised learning

Applied intelligence (Dordrecht, Netherlands), 2023, Vol.53 (2), p.1287-1305

2023

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A Model for Distributed Processing and Analyses of NGS Data under Map-Reduce Paradigm

IEEE/ACM transactions on computational biology and bioinformatics, 2019-05, Vol.16 (3), p.827-840

2019

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Cluster Quality based Non-Reductional (CQNR) oversampling technique and effector protein predictor based on 3D structure (EPP3D) of proteins

Computers in biology and medicine, 2019-09, Vol.112, p.103374-103374, Article 103374

2019

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ASAPP: Architectural Similarity-Based Automated Pathway Prediction System and Its Application in Host-Pathogen Interactions

IEEE/ACM transactions on computational biology and bioinformatics, 2020-03, Vol.17 (2), p.506-515

2020

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Obesity: An Immunometabolic Perspective

Pattern Recognition and Machine Intelligence: 10th International Conference, PReMI 2023, Kolkata, India, December 12-15, 2023, Proceedings

Comparing methods for metabolic network analysis and an application to metabolic engineering

CNV-CH: A Convex Hull Based Segmentation Approach to Detect Copy Number Variations (CNV) Using Next-Generation Sequencing Data

In Silico Modeling of Crabtree Effect

Divisive Correlation Clustering Algorithm (DCCA) for grouping of genes: detecting varying patterns in expression profiles

Exploring the Altered Dynamics of Mammalian Central Carbon Metabolic Pathway in Cancer Cells: A Classical Control Theoretic Approach

Unsupervised neural network for single cell Multi-omics INTegration (UMINT): an application to health and disease

A model of an integrated immune system pathway in Homo sapiens and its interaction with superantigen producing expression regulatory pathway in Staphylococcus aureus: comparing behavior of pathogen perturbed and unperturbed pathway

Estimating gene expression from DNA methylation and copy number variation: A deep learning regression model for multi-omics integration

A control theoretic three timescale model for analyzing energy management in mammalian cancer cells

Simulating an infection growth model in certain healthy metabolic pathways of Homo sapiens for highlighting their role in Type I Diabetes mellitus using fire-spread strategy, feedbacks and sensitivities

Catestatin improves insulin sensitivity by attenuating endoplasmic reticulum stress: In vivo and in silico validation

OCDD: an obesity and co-morbid disease database

Metabolic pathway engineering: Perspectives and applications

MDSR-NMF: Multiple deconstruction single reconstruction deep neural network model for non-negative matrix factorization

Immunoinformatics: an integrated scenario

GenSeg and MR-GenSeg: A Novel Segmentation Algorithm and its Parallel MapReduce Based Approach for Identifying Genomic Regions With Copy Number Variations

Block Search Stochastic Simulation Algorithm (BlSSSA): A Fast Stochastic Simulation Algorithm for Modeling Large Biochemical Networks

ENLIGHTENMENT: A Scalable Annotated Database of Genomics and NGS-Based Nucleotide Level Profiles

Gradient descent optimization in gene regulatory pathways

CASSL: A cell-type annotation method for single cell transcriptomics data using semi-supervised learning

A Model for Distributed Processing and Analyses of NGS Data under Map-Reduce Paradigm

Cluster Quality based Non-Reductional (CQNR) oversampling technique and effector protein predictor based on 3D structure (EPP3D) of proteins

ASAPP: Architectural Similarity-Based Automated Pathway Prediction System and Its Application in Host-Pathogen Interactions

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