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Amalgamated cross-species transcriptomes reveal organ-specific propensity in gene expression evolution

Nature communications, 2020-09, Vol.11 (1), p.1-14, Article 4459

2020

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Repetitive elements may comprise over two-thirds of the human genome

PLoS genetics, 2011-12, Vol.7 (12), p.e1002384-e1002384

2011

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Amino acid coevolution induces an evolutionary Stokes shift

Proceedings of the National Academy of Sciences - PNAS, 2012-05, Vol.109 (21), p.E1352-E1359

2012

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Author Correction: Amalgamated cross-species transcriptomes reveal organ-specific propensity in gene expression evolution

Nature communications, 2021-09, Vol.12 (1), p.5313-5313, Article 5313

2021

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Rapid microsatellite identification from Illumina paired-end genomic sequencing in two birds and a snake

PloS one, 2012-02, Vol.7 (2), p.e30953-e30953

2012

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Gene-specific RNA polymerase II phosphorylation and the CTD code

Nature structural & molecular biology, 2010-10, Vol.17 (10), p.1279-1286

2010

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Evidence for an ancient adaptive episode of convergent molecular evolution

Proceedings of the National Academy of Sciences - PNAS, 2009-06, Vol.106 (22), p.8986-8991

2009

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Strong evidence for protein epistasis, weak evidence against it

Proceedings of the National Academy of Sciences - PNAS, 2014-04, Vol.111 (15), p.E1450-E1450

2014

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Adaptive evolution and functional redesign of core metabolic proteins in snakes

PloS one, 2008-05, Vol.3 (5), p.e2201-e2201

2008

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Phylodynamics of a regional SARS-CoV-2 rapid spreading event in Colorado in late 2020

PloS one, 2022-10, Vol.17 (10), p.e0274050

2022

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Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence

Molecular ecology resources, 2010-03, Vol.10 (2), p.341-347

2010

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Population genomic analyses of schistosome parasites highlight critical challenges facing endgame elimination efforts

Scientific reports, 2021-03, Vol.11 (1), p.6884-11, Article 6884

2021

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Finding and extending ancient simple sequence repeat-derived regions in the human genome

Mobile DNA, 2020-02, Vol.11 (1), p.11-11, Article 11

2020

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Increased Taxon Sampling Is Advantageous for Phylogenetic Inference

Systematic biology, 2002-08, Vol.51 (4), p.664-671

2002

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Assessing the accuracy of ancestral protein reconstruction methods

PLoS computational biology, 2006-06, Vol.2 (6), p.e69-e69

2006

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Patterns of relatedness and genetic diversity inferred from whole genome sequencing of archival blood fluke miracidia (Schistosoma japonicum)

PLoS neglected tropical diseases, 2021-01, Vol.15 (1), p.e0009020

2021

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Integrating genomic and epidemiologic data to accelerate progress toward schistosomiasis elimination

eLife, 2022-08, Vol.11

2022

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LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders

Genome biology and evolution, 2012-01, Vol.4 (2), p.168-183

2012

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Society for Molecular Biology and Evolution, Council and Business Meetings, 2019, Manchester, United Kingdom

Molecular biology and evolution, 2020-01, Vol.37 (1), p.301-303

Pollock, David D

2020

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Comparison of Normalization Methods for Construction of Large, Multiplex Amplicon Pools for Next-Generation Sequencing

Applied and Environmental Microbiology, 2010-06, Vol.76 (12), p.3863-3868

2010

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Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

Genome Research, 2007-07, Vol.17 (7), p.992-1004

2007

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Whole Genome Amplification and Reduced-Representation Genome Sequencing of Schistosoma japonicum Miracidia

PLoS neglected tropical diseases, 2017-01, Vol.11 (1), p.e0005292

2017

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Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes

Genome biology, 2011-07, Vol.12 (7), p.406-406

2011

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Comparative mitochondrial genomics of snakes: extraordinary substitution rate dynamics and functionality of the duplicate control region

BMC evolutionary biology, 2007-07, Vol.7 (1), p.123, Article 123

2007

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Society for Molecular Biology and Evolution, Council and Business Meetings, 2018, Yokohama, Japan

Molecular biology and evolution, 2019-01, Vol.36 (1), p.204-206

Pollock, David D

2019

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Amalgamated cross-species transcriptomes reveal organ-specific propensity in gene expression evolution

Repetitive elements may comprise over two-thirds of the human genome

Amino acid coevolution induces an evolutionary Stokes shift

Author Correction: Amalgamated cross-species transcriptomes reveal organ-specific propensity in gene expression evolution

Rapid microsatellite identification from Illumina paired-end genomic sequencing in two birds and a snake

Gene-specific RNA polymerase II phosphorylation and the CTD code

Evidence for an ancient adaptive episode of convergent molecular evolution

Strong evidence for protein epistasis, weak evidence against it

Adaptive evolution and functional redesign of core metabolic proteins in snakes

Phylodynamics of a regional SARS-CoV-2 rapid spreading event in Colorado in late 2020

Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence

Population genomic analyses of schistosome parasites highlight critical challenges facing endgame elimination efforts

Finding and extending ancient simple sequence repeat-derived regions in the human genome

Increased Taxon Sampling Is Advantageous for Phylogenetic Inference

Assessing the accuracy of ancestral protein reconstruction methods

Patterns of relatedness and genetic diversity inferred from whole genome sequencing of archival blood fluke miracidia (Schistosoma japonicum)

Integrating genomic and epidemiologic data to accelerate progress toward schistosomiasis elimination

LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders

Society for Molecular Biology and Evolution, Council and Business Meetings, 2019, Manchester, United Kingdom

Comparison of Normalization Methods for Construction of Large, Multiplex Amplicon Pools for Next-Generation Sequencing

Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

Whole Genome Amplification and Reduced-Representation Genome Sequencing of Schistosoma japonicum Miracidia

Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes

Comparative mitochondrial genomics of snakes: extraordinary substitution rate dynamics and functionality of the duplicate control region

Society for Molecular Biology and Evolution, Council and Business Meetings, 2018, Yokohama, Japan

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