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Text-mining clinically relevant cancer biomarkers for curation into the CIViC database

Genome medicine, 2019-12, Vol.11 (1), p.78-78, Article 78

2019

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Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples

Genetics in medicine, 2019-04, Vol.21 (4), p.972-981

2019

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Large scale genotype‐ and phenotype‐driven machine learning in Von Hippel‐Lindau disease

Human mutation, 2022-09, Vol.43 (9), p.1268-1285

2022

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Glycogen branches out: new perspectives on the role of glycogen metabolism in the integration of metabolic pathways

American journal of physiology: endocrinology and metabolism, 2006-07, Vol.291 (1), p.E1-E8

2006

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Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community‐driven standards

Human mutation, 2018-11, Vol.39 (11), p.1721-1732

2018

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Standard operating procedure for curation and clinical interpretation of variants in cancer

Genome medicine, 2019-11, Vol.11 (1), p.76-76, Article 76

2019

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P085: Addition of new variant classes to the CIViC data model

Genetics in Medicine Open, 2024, Vol.2, p.100967, Article 100967

2024

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Functional inactivation of Rb sensitizes cancer cells to TSC2 inactivation induced cell death

Cancer letters, 2013-01, Vol.328 (1), p.36-43

2013

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P103: Operationalizing structured curated scientific literature (CIViC and Hypothesis) in developing gene-specific recommendations of the ClinGen VHL Variant Curation Expert Panel

Genetics in Medicine Open, 2024, Vol.2, p.100984, Article 100984

2024

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CIViCpy: A Python Software Development and Analysis Toolkit for the CIViC Knowledgebase

JCO clinical cancer informatics, 2020-03, Vol.4, p.245

2020

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P079: ClinGen Somatic and CIViC collaborate to comprehensively evaluate somatic variants in cancer

Genetics in Medicine Open, 2023, Vol.1 (1), p.100098, Article 100098

2023

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Differential Regulation of Glycogenolysis by Mutant Protein Phosphatase-1 Glycogen-targeting Subunits

The Journal of biological chemistry, 2009-07, Vol.284 (29), p.19544-19553

2009

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Central Role for Protein Targeting to Glycogen in the Maintenance of Cellular Glycogen Stores in 3T3-L1 Adipocytes

Molecular and Cellular Biology, 2006-01, Vol.26 (1), p.334-342

2006

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The role of protein translocation in the regulation of glycogen metabolism

Journal of cellular biochemistry, 2008-05, Vol.104 (2), p.435-443

2008

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Open-Sourced CIViC Annotation Pipeline to Identify and Annotate Clinically Relevant Variants Using Single-Molecule Molecular Inversion Probes

JCO clinical cancer informatics, 2019-10, Vol.3, p.1

2019

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Transgenic overexpression of protein targeting to glycogen markedly increases adipocytic glycogen storage in mice

American journal of physiology: endocrinology and metabolism, 2007-03, Vol.292 (3), p.E952-E963

2007

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Standards for the classification of pathogenicity of somatic variants in cancer (oncogenicity): Joint recommendations of Clinical Genome Resource (ClinGen), Cancer Genomics Consortium (CGC), and Variant Interpretation for Cancer Consortium (VICC)

Genetics in medicine, 2022-05, Vol.24 (5), p.986-998

2022

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Gene expression profiles in HEK-293 cells with low or high store-operated calcium entry: can regulatory as well as regulated genes be identified?

Physiological genomics, 2005-03, Vol.21 (1), p.14-33

2005

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Abstract 1418: Identification of recurrent regulatory mutations in breast cancer

Cancer research (Chicago, Ill.), 2018-07, Vol.78 (13_Supplement), p.1418-1418

2018

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19. Developing a generalized model for variants in CIViC

Cancer genetics, 2023-11, Vol.278-279, p.6

2023

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43. Adapting CIViC, a cancer variant interpretation knowledgebase, to support variants in disorders of somatic mosaicism

Cancer genetics, 2022-01, Vol.260-261, p.14-15

2022

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Abstract 208: Development of Evidence Statement curation algorithms to aid cancer variant interpretation

Cancer research (Chicago, Ill.), 2021-07, Vol.81 (13_Supplement), p.208-208

2021

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29. Tools for functional genomics dataset visualization and analysis

Cancer genetics, 2022-11, Vol.268-269, p.10

2022

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35. Evolution of a variant curation procedures in the open-access cancer variant interpretation knowledgebase CIViC

Cancer genetics, 2023-11, Vol.278-279, p.11

2023

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Text-mining clinically relevant cancer biomarkers for curation into the CIViC database

Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples

Large scale genotype‐ and phenotype‐driven machine learning in Von Hippel‐Lindau disease

Glycogen branches out: new perspectives on the role of glycogen metabolism in the integration of metabolic pathways

Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community‐driven standards

Standard operating procedure for curation and clinical interpretation of variants in cancer

P085: Addition of new variant classes to the CIViC data model

Functional inactivation of Rb sensitizes cancer cells to TSC2 inactivation induced cell death

P103: Operationalizing structured curated scientific literature (CIViC and Hypothesis) in developing gene-specific recommendations of the ClinGen VHL Variant Curation Expert Panel

CIViCpy: A Python Software Development and Analysis Toolkit for the CIViC Knowledgebase

P079: ClinGen Somatic and CIViC collaborate to comprehensively evaluate somatic variants in cancer

Differential Regulation of Glycogenolysis by Mutant Protein Phosphatase-1 Glycogen-targeting Subunits

Central Role for Protein Targeting to Glycogen in the Maintenance of Cellular Glycogen Stores in 3T3-L1 Adipocytes

The role of protein translocation in the regulation of glycogen metabolism

Open-Sourced CIViC Annotation Pipeline to Identify and Annotate Clinically Relevant Variants Using Single-Molecule Molecular Inversion Probes

Transgenic overexpression of protein targeting to glycogen markedly increases adipocytic glycogen storage in mice

Standards for the classification of pathogenicity of somatic variants in cancer (oncogenicity): Joint recommendations of Clinical Genome Resource (ClinGen), Cancer Genomics Consortium (CGC), and Variant Interpretation for Cancer Consortium (VICC)

Gene expression profiles in HEK-293 cells with low or high store-operated calcium entry: can regulatory as well as regulated genes be identified?

Abstract 1418: Identification of recurrent regulatory mutations in breast cancer

19. Developing a generalized model for variants in CIViC

43. Adapting CIViC, a cancer variant interpretation knowledgebase, to support variants in disorders of somatic mosaicism

Abstract 208: Development of Evidence Statement curation algorithms to aid cancer variant interpretation

Dissecting the Knowns for the Unknowns: Refining the Classification of Genomic Variations in Hematological Diseases By the Clingen Hematological Cancer Taskforce (HCT)

29. Tools for functional genomics dataset visualization and analysis

35. Evolution of a variant curation procedures in the open-access cancer variant interpretation knowledgebase CIViC

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