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iLearnPlus: a comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization

Nucleic acids research, 2021-06, Vol.49 (10), p.e60-e60

2021

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iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences

Bioinformatics, 2018-07, Vol.34 (14), p.2499-2502

2018

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iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data

Briefings in bioinformatics, 2020-05, Vol.21 (3), p.1047-1057

2020

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Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome

Bioinformatics, 2018-12, Vol.34 (24), p.4223-4231

2018

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Dual-specificity phosphatases: critical regulators with diverse cellular targets

Biochemical journal, 2009-03, Vol.418 (3), p.475-489

2009

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Enhancing therapeutic anti-cancer responses by combining immune checkpoint and tyrosine kinase inhibition

Molecular cancer, 2022-09, Vol.21 (1), p.1-20, Article 189

2022

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Cortactin signalling and dynamic actin networks

Biochemical journal, 2004-08, Vol.382 (Pt 1), p.13-25

Daly, Roger J

2004

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Proteomic Profiling of Human Prostate Cancer-associated Fibroblasts (CAF) Reveals LOXL2-dependent Regulation of the Tumor Microenvironment[S]

Molecular & cellular proteomics, 2019-07, Vol.18 (7), p.1410-1427

2019

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A robust methodology to subclassify pseudokinases based on their nucleotide-binding properties

Biochemical journal, 2014-01, Vol.457 (2), p.323-334

2014

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PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection

Scientific reports, 2017-07, Vol.7 (1), p.6862-19, Article 6862

2017

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Enduring epigenetic landmarks define the cancer microenvironment

Genome research, 2018-05, Vol.28 (5), p.625-638

2018

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INPP4B promotes PI3Kα-dependent late endosome formation and Wnt/β-catenin signaling in breast cancer

Nature communications, 2021-05, Vol.12 (1), p.3140-3140, Article 3140

2021

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Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods

Briefings in bioinformatics, 2019-11, Vol.20 (6), p.2150-2166

2019

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Proteome‐based molecular subtyping and therapeutic target prediction in gastric cancer

Molecular oncology, 2024-06, Vol.18 (6), p.1437-1459

2024

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AXL confers cell migration and invasion by hijacking a PEAK1-regulated focal adhesion protein network

Nature communications, 2020-07, Vol.11 (1), p.3586-3586, Article 3586

2020

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Function, regulation and pathological roles of the Gab/DOS docking proteins

Cell communication and signaling, 2009-09, Vol.7 (1), p.22-22, Article 22

2009

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Pediatric glioma histone H3.3 K27M/G34R mutations drive abnormalities in PML nuclear bodies

Genome Biology, 2023-12, Vol.24 (1), p.284-27, Article 284

2023

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CRISPRi enables isoform-specific loss-of-function screens and identification of gastric cancer-specific isoform dependencies

Genome Biology, 2021-01, Vol.22 (1), p.47-47, Article 47

2021

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Structural mapping of PEAK pseudokinase interactions identifies 14-3-3 as a molecular switch for PEAK3 signaling

Nature communications, 2023-06, Vol.14 (1), p.3542-3542, Article 3542

2023

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FGFR3 signaling and function in triple negative breast cancer

Cell communication and signaling, 2020-01, Vol.18 (1), p.13-13, Article 13

2020

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Evaluation of FGFR targeting in breast cancer through interrogation of patient-derived models

Breast cancer research : BCR, 2021-08, Vol.23 (1), p.82-20, Article 82

2021

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BMP4-Induced Suppression of Breast Cancer Metastasis Is Associated with Inhibition of Cholesterol Biosynthesis

International journal of molecular sciences, 2024-09, Vol.25 (17), p.9160

2024

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Effect of FAK inhibitor VS‐6063 (defactinib) on docetaxel efficacy in prostate cancer

The Prostate, 2018-03, Vol.78 (4), p.308-317

2018

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Structure of SgK223 pseudokinase reveals novel mechanisms of homotypic and heterotypic association

Nature communications, 2017-10, Vol.8 (1), p.1157-15, Article 1157

2017

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Identification of Novel Response and Predictive Biomarkers to Hsp90 Inhibitors Through Proteomic Profiling of Patient-derived Prostate Tumor Explants

Molecular & cellular proteomics, 2018-08, Vol.17 (8), p.1470-1486

2018

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iLearnPlus: a comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization

iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences

iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data

Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome

Dual-specificity phosphatases: critical regulators with diverse cellular targets

Enhancing therapeutic anti-cancer responses by combining immune checkpoint and tyrosine kinase inhibition

Cortactin signalling and dynamic actin networks

Proteomic Profiling of Human Prostate Cancer-associated Fibroblasts (CAF) Reveals LOXL2-dependent Regulation of the Tumor Microenvironment[S]

A robust methodology to subclassify pseudokinases based on their nucleotide-binding properties

PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection

Enduring epigenetic landmarks define the cancer microenvironment

INPP4B promotes PI3Kα-dependent late endosome formation and Wnt/β-catenin signaling in breast cancer

Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods

Proteome‐based molecular subtyping and therapeutic target prediction in gastric cancer

AXL confers cell migration and invasion by hijacking a PEAK1-regulated focal adhesion protein network

Function, regulation and pathological roles of the Gab/DOS docking proteins

Pediatric glioma histone H3.3 K27M/G34R mutations drive abnormalities in PML nuclear bodies

CRISPRi enables isoform-specific loss-of-function screens and identification of gastric cancer-specific isoform dependencies

Structural mapping of PEAK pseudokinase interactions identifies 14-3-3 as a molecular switch for PEAK3 signaling

FGFR3 signaling and function in triple negative breast cancer

Evaluation of FGFR targeting in breast cancer through interrogation of patient-derived models

BMP4-Induced Suppression of Breast Cancer Metastasis Is Associated with Inhibition of Cholesterol Biosynthesis

Effect of FAK inhibitor VS‐6063 (defactinib) on docetaxel efficacy in prostate cancer

Structure of SgK223 pseudokinase reveals novel mechanisms of homotypic and heterotypic association

Identification of Novel Response and Predictive Biomarkers to Hsp90 Inhibitors Through Proteomic Profiling of Patient-derived Prostate Tumor Explants

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