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SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

PloS one, 2016-06, Vol.11 (6), p.e0157022-e0157022

2016

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Bacteriophages to reduce gut carriage of antibiotic resistant uropathogens with low impact on microbiota composition

Environmental microbiology, 2016-07, Vol.18 (7), p.2237-2245

2016

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Improvement of variables interpretability in kernel PCA

BMC bioinformatics, 2023-07, Vol.24 (1), p.282-282, Article 282

2023

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Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses

Bioinformatics (Oxford, England), 2012-06, Vol.28 (11), p.1542-1543

2012

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Identification and characterization of the genetic changes responsible for the characteristic smooth‐to‐rough morphotype alterations of clinically persistent Mycobacterium abscessus

Molecular microbiology, 2013-11, Vol.90 (3), p.612-629

2013

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Bacteriocin from epidemic Listeria strains alters the host intestinal microbiota to favor infection

Proceedings of the National Academy of Sciences - PNAS, 2016-05, Vol.113 (20), p.5706-5711

2016

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A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

Briefings in bioinformatics, 2013-11, Vol.14 (6), p.671-683

2013

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Nonpathogenic SIV infection of African green monkeys induces a strong but rapidly controlled type I IFN response

The Journal of clinical investigation, 2009-12, Vol.119 (12), p.3544-3555

2009

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Comparative analysis of viral RNA signatures on different RIG-I-like receptors

eLife, 2016-03, Vol.5, p.e11275-e11275

2016

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Lassa virus activates myeloid dendritic cells but suppresses their ability to stimulate T cells

PLoS pathogens, 2018-11, Vol.14 (11), p.e1007430-e1007430

2018

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Vaccines inducing immunity to Lassa virus glycoprotein and nucleoprotein protect macaques after a single shot

Science translational medicine, 2019-10, Vol.11 (512)

2019

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Identification of the virulence landscape essential for Entamoeba histolytica invasion of the human colon

PLoS pathogens, 2013-12, Vol.9 (12), p.e1003824-e1003824

2013

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MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets

Bioinformatics (Oxford, England), 2016-11, Vol.32 (22), p.3413-3419

2016

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GH16 and GH81 family β‐(1,3)‐glucanases in Aspergillus fumigatus are essential for conidial cell wall morphogenesis

Cellular microbiology, 2016-09, Vol.18 (9), p.1285-1293

2016

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Individual co-variation between viral RNA load and gene expression reveals novel host factors during early dengue virus infection of the Aedes aegypti midgut

PLoS neglected tropical diseases, 2017-12, Vol.11 (12), p.e0006152-e0006152

2017

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Virulence strategies for infecting phagocytes deduced from the in vivo transcriptional program of Legionella pneumophila

Cellular microbiology, 2006-08, Vol.8 (8), p.1228-1240

2006

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Anti-Inflammatory Effect of Lactobacillus casei on Shigella-Infected Human Intestinal Epithelial Cells

Journal of Immunology, 2006-01, Vol.176 (2), p.1228-1237

2006

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Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation

BMC genomics, 2018-05, Vol.19 (1), p.373-373, Article 373

2018

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Docosahexaenoic acid inhibits Helicobacter pylori growth in vitro and mice gastric mucosa colonization

PloS one, 2012-04, Vol.7 (4), p.e35072-e35072

2012

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Global Regulator CodY Regulates Toxin Gene Expression in Bacillus anthracis and Is Required for Full Virulence

Infection and Immunity, 2009-10, Vol.77 (10), p.4437-4445

2009

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Gene expression analysis in EBV-infected ataxia-telangiectasia cell lines by RNA-sequencing reveals protein synthesis defect and immune abnormalities

Orphanet journal of rare diseases, 2021-06, Vol.16 (1), p.288-11, Article 288

2021

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Metabolic plasticity of HIV-specific CD8+ T cells is associated with enhanced antiviral potential and natural control of HIV-1 infection

Nature metabolism, 2019-07, Vol.1 (7), p.704-716

2019

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Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns

PloS one, 2015-10, Vol.10 (10), p.e0140979-e0140979

2015

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Non-Pathogenic Mopeia Virus Induces More Robust Activation of Plasmacytoid Dendritic Cells than Lassa Virus

Viruses, 2019-03, Vol.11 (3), p.287

2019

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Endoplasmic reticulum stress-sensing mechanism is activated in Entamoeba histolytica upon treatment with nitric oxide

PloS one, 2012-02, Vol.7 (2), p.e31777-e31777

2012

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SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

Bacteriophages to reduce gut carriage of antibiotic resistant uropathogens with low impact on microbiota composition

Improvement of variables interpretability in kernel PCA

Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses

Identification and characterization of the genetic changes responsible for the characteristic smooth‐to‐rough morphotype alterations of clinically persistent Mycobacterium abscessus

Bacteriocin from epidemic Listeria strains alters the host intestinal microbiota to favor infection

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

Nonpathogenic SIV infection of African green monkeys induces a strong but rapidly controlled type I IFN response

Comparative analysis of viral RNA signatures on different RIG-I-like receptors

Lassa virus activates myeloid dendritic cells but suppresses their ability to stimulate T cells

Vaccines inducing immunity to Lassa virus glycoprotein and nucleoprotein protect macaques after a single shot

Identification of the virulence landscape essential for Entamoeba histolytica invasion of the human colon

MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets

GH16 and GH81 family β‐(1,3)‐glucanases in Aspergillus fumigatus are essential for conidial cell wall morphogenesis

Individual co-variation between viral RNA load and gene expression reveals novel host factors during early dengue virus infection of the Aedes aegypti midgut

Virulence strategies for infecting phagocytes deduced from the in vivo transcriptional program of Legionella pneumophila

Anti-Inflammatory Effect of Lactobacillus casei on Shigella-Infected Human Intestinal Epithelial Cells

Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation

Docosahexaenoic acid inhibits Helicobacter pylori growth in vitro and mice gastric mucosa colonization

Global Regulator CodY Regulates Toxin Gene Expression in Bacillus anthracis and Is Required for Full Virulence

Gene expression analysis in EBV-infected ataxia-telangiectasia cell lines by RNA-sequencing reveals protein synthesis defect and immune abnormalities

Metabolic plasticity of HIV-specific CD8+ T cells is associated with enhanced antiviral potential and natural control of HIV-1 infection

Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns

Non-Pathogenic Mopeia Virus Induces More Robust Activation of Plasmacytoid Dendritic Cells than Lassa Virus

Endoplasmic reticulum stress-sensing mechanism is activated in Entamoeba histolytica upon treatment with nitric oxide

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