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Sequencing-based methods and resources to study antimicrobial resistance

Nature reviews. Genetics, 2019-06, Vol.20 (6), p.356

2019

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The rapid spread of carbapenem-resistant Enterobacteriaceae

Drug resistance updates, 2016-11, Vol.29, p.30-46

2016

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Cotrimoxazole Prophylaxis Increases Resistance Gene Prevalence and α-Diversity but Decreases β-Diversity in the Gut Microbiome of Human Immunodeficiency Virus–Exposed, Uninfected Infants

Clinical infectious diseases, 2020-12, Vol.71 (11), p.2858-2868

2020

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Environmental remodeling of human gut microbiota and antibiotic resistome in livestock farms

Nature communications, 2020-03, Vol.11 (1), p.1427-11, Article 1427

2020

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Spatiotemporal dynamics of multidrug resistant bacteria on intensive care unit surfaces

Nature communications, 2019-10, Vol.10 (1), p.4569-19, Article 4569

2019

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Acute and persistent effects of commonly used antibiotics on the gut microbiome and resistome in healthy adults

Cell reports (Cambridge), 2022-04, Vol.39 (2), p.110649-110649, Article 110649

2022

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Phenotypic and genotypic characterization of linezolid-resistant Enterococcus faecium from the USA and Pakistan

Journal of antimicrobial chemotherapy, 2019-12, Vol.74 (12), p.3445-3452

2019

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Genomic Characterization of Antibiotic Resistant Escherichia coli Isolated From Domestic Chickens in Pakistan

Frontiers in microbiology, 2020-01, Vol.10, p.3052

2020

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Destination shapes antibiotic resistance gene acquisitions, abundance increases, and diversity changes in Dutch travelers

Genome medicine, 2021-06, Vol.13 (1), p.79-79, Article 79

2021

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Infant diet and maternal gestational weight gain predict early metabolic maturation of gut microbiomes

Nature medicine, 2018-12, Vol.24 (12), p.1822-1829

2018

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Structural and molecular rationale for the diversification of resistance mediated by the Antibiotic_NAT family

Communications biology, 2022-03, Vol.5 (1), p.263-263, Article 263

2022

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Daily occupational exposure in swine farm alters human skin microbiota and antibiotic resistome

iMeta, 2024-02, Vol.3 (1), p.e158-n/a

2024

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Superficieibacter electus gen. nov., sp. nov., an Extended-Spectrum β-Lactamase Possessing Member of the Enterobacteriaceae Family, Isolated From Intensive Care Unit Surfaces

Frontiers in microbiology, 2018-07, Vol.9, p.1629-1629

2018

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Breakpoint beware: reliance on historical breakpoints for Enterobacteriaceae leads to discrepancies in interpretation of susceptibility testing for carbapenems and cephalosporins and gaps in detection of carbapenem-resistant organisms

European journal of clinical microbiology & infectious diseases, 2020, Vol.39 (1), p.187-195

2020

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Malignant cancer and invasive placentation: A case for positive pleiotropy between endometrial and malignancy phenotypes

Evolution, medicine, and public health, 2014-10, Vol.2014 (1), p.136-145

2014

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Diet and Maternal Gestational Weight Gain Predict Metabolic Maturation of Infant Gut Microbiomes

Nature medicine, 2018-10, Vol.24 (12), p.1822-1829

2018

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Sequencing-based methods and resources to study antimicrobial resistance

The rapid spread of carbapenem-resistant Enterobacteriaceae

Cotrimoxazole Prophylaxis Increases Resistance Gene Prevalence and α-Diversity but Decreases β-Diversity in the Gut Microbiome of Human Immunodeficiency Virus–Exposed, Uninfected Infants

Environmental remodeling of human gut microbiota and antibiotic resistome in livestock farms

Spatiotemporal dynamics of multidrug resistant bacteria on intensive care unit surfaces

Acute and persistent effects of commonly used antibiotics on the gut microbiome and resistome in healthy adults

Manure Microbial Communities and Resistance Profiles Reconfigure after Transition to Manure Pits and Differ from Those in Fertilized Field Soil

Phenotypic and genotypic characterization of linezolid-resistant Enterococcus faecium from the USA and Pakistan

Genomic Characterization of Antibiotic Resistant Escherichia coli Isolated From Domestic Chickens in Pakistan

Destination shapes antibiotic resistance gene acquisitions, abundance increases, and diversity changes in Dutch travelers

Infant diet and maternal gestational weight gain predict early metabolic maturation of gut microbiomes

Structural and molecular rationale for the diversification of resistance mediated by the Antibiotic_NAT family

Daily occupational exposure in swine farm alters human skin microbiota and antibiotic resistome

Superficieibacter electus gen. nov., sp. nov., an Extended-Spectrum β-Lactamase Possessing Member of the Enterobacteriaceae Family, Isolated From Intensive Care Unit Surfaces

Breakpoint beware: reliance on historical breakpoints for Enterobacteriaceae leads to discrepancies in interpretation of susceptibility testing for carbapenems and cephalosporins and gaps in detection of carbapenem-resistant organisms

Malignant cancer and invasive placentation: A case for positive pleiotropy between endometrial and malignancy phenotypes

Diet and Maternal Gestational Weight Gain Predict Metabolic Maturation of Infant Gut Microbiomes

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