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Joint profiling of chromatin accessibility and gene expression in thousands of single cells

Science (American Association for the Advancement of Science), 2018-09, Vol.361 (6409), p.1380-1385

2018

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Genome-Wide Association Studies of the Human Gut Microbiota

PloS one, 2015-11, Vol.10 (11), p.e0140301-e0140301

2015

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Comprehensive single-cell transcriptional profiling of a multicellular organism

Science (American Association for the Advancement of Science), 2017-08, Vol.357 (6352), p.661-667

2017

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Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing

Science (American Association for the Advancement of Science), 2015-05, Vol.348 (6237), p.910-914

2015

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Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data

Molecular cell, 2018-09, Vol.71 (5), p.858-871.e8

2018

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A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility

Cell, 2018-08, Vol.174 (5), p.1309-1324.e18

2018

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The cis-regulatory dynamics of embryonic development at single-cell resolution

Nature (London), 2018-03, Vol.555 (7697), p.538-542

2018

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A human cell atlas of fetal chromatin accessibility

Science (American Association for the Advancement of Science), 2020-11, Vol.370 (6518)

2020

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The functional consequences of variation in transcription factor binding

PLoS genetics, 2014-03, Vol.10 (3), p.e1004226-e1004226

2014

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Primate Transcript and Protein Expression Levels Evolve Under Compensatory Selection Pressures

Science (American Association for the Advancement of Science), 2013-11, Vol.342 (6162), p.1100-1104

2013

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CRISPR/Cas9-Mediated Scanning for Regulatory Elements Required for HPRT1 Expression via Thousands of Large, Programmed Genomic Deletions

American journal of human genetics, 2017-08, Vol.101 (2), p.192-205

2017

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The effects of EBV transformation on gene expression levels and methylation profiles

Human molecular genetics, 2011-04, Vol.20 (8), p.1643-1652

2011

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txci-ATAC-seq: a massive-scale single-cell technique to profile chromatin accessibility

Genome Biology, 2024-03, Vol.25 (1), p.78-78

2024

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Evaluation of Swab-Seq as a scalable, sensitive assay for community surveillance of SARS-CoV-2 infection

Scientific reports, 2022-02, Vol.12 (1), p.3047-3047, Article 3047

2022

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Single-cell 'omic profiles of human aortic endothelial cells in vitro and human atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype and response to activating perturbations

eLife, 2024-04, Vol.12

2024

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Single-cell ATAC-Seq in human pancreatic islets and deep learning upscaling of rare cells reveals cell-specific type 2 diabetes regulatory signatures

Molecular metabolism (Germany), 2020-02, Vol.32, p.109-121

2020

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Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei

BMC genomics, 2022-03, Vol.23 (1), p.214-18, Article 214

2022

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Breast tumor stiffness instructs bone metastasis via maintenance of mechanical conditioning

Cell reports (Cambridge), 2021-06, Vol.35 (13), p.109293-109293, Article 109293

2021

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CC16 drives VLA-2-dependent SPLUNC1 expression

Frontiers in immunology, 2023-11, Vol.14, p.1277582-1277582

2023

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An upstream enhancer regulates Gpihbp1 expression in a tissue-specific manner[S]

Journal of lipid research, 2019-04, Vol.60 (4), p.869-879

2019

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The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes

Human molecular genetics, 2012-05, Vol.21 (9), p.2111-2123

2012

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Lactoylglutathione promotes inflammatory signaling in macrophages through histone lactoylation

Molecular metabolism (Germany), 2024-03, Vol.81, p.101888-101888, Article 101888

2024

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Regulatory element copy number differences shape primate expression profiles

Proceedings of the National Academy of Sciences - PNAS, 2012-07, Vol.109 (31), p.12656-12661

2012

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Single-Cell Profiling of Premature Neonate Airways Reveals a Continuum of Myeloid Differentiation

American journal of respiratory cell and molecular biology, 2023-12, Vol.69 (6), p.689

2023

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Rhinovirus Infections in Individuals with Asthma Increase ACE2 Expression and Cytokine Pathways Implicated in COVID-19

American journal of respiratory and critical care medicine, 2020-09, Vol.202 (5), p.753-755

2020

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Joint profiling of chromatin accessibility and gene expression in thousands of single cells

Genome-Wide Association Studies of the Human Gut Microbiota

Comprehensive single-cell transcriptional profiling of a multicellular organism

Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing

Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data

A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility

The cis-regulatory dynamics of embryonic development at single-cell resolution

A human cell atlas of fetal chromatin accessibility

The functional consequences of variation in transcription factor binding

Primate Transcript and Protein Expression Levels Evolve Under Compensatory Selection Pressures

CRISPR/Cas9-Mediated Scanning for Regulatory Elements Required for HPRT1 Expression via Thousands of Large, Programmed Genomic Deletions

The effects of EBV transformation on gene expression levels and methylation profiles

txci-ATAC-seq: a massive-scale single-cell technique to profile chromatin accessibility

Evaluation of Swab-Seq as a scalable, sensitive assay for community surveillance of SARS-CoV-2 infection

Single-cell 'omic profiles of human aortic endothelial cells in vitro and human atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype and response to activating perturbations

Single-cell ATAC-Seq in human pancreatic islets and deep learning upscaling of rare cells reveals cell-specific type 2 diabetes regulatory signatures

Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei

Breast tumor stiffness instructs bone metastasis via maintenance of mechanical conditioning

CC16 drives VLA-2-dependent SPLUNC1 expression

An upstream enhancer regulates Gpihbp1 expression in a tissue-specific manner[S]

The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes

Lactoylglutathione promotes inflammatory signaling in macrophages through histone lactoylation

Regulatory element copy number differences shape primate expression profiles

Single-Cell Profiling of Premature Neonate Airways Reveals a Continuum of Myeloid Differentiation

Rhinovirus Infections in Individuals with Asthma Increase ACE2 Expression and Cytokine Pathways Implicated in COVID-19

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