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PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

Bioinformatics, 2012-01, Vol.28 (2), p.184-190

2012

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Predicting human protein function with multi-task deep neural networks

PloS one, 2018-06, Vol.13 (6), p.e0198216-e0198216

2018

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Interleukin-22 regulates neutrophil recruitment in ulcerative colitis and is associated with resistance to ustekinumab therapy

Nature communications, 2022-10, Vol.13 (1), p.5820-5820, Article 5820

2022

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Using deep maxout neural networks to improve the accuracy of function prediction from protein interaction networks

PloS one, 2019-07, Vol.14 (7), p.e0209958-e0209958

2019

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Tumor-activated lymph node fibroblasts suppress T cell function in diffuse large B cell lymphoma

The Journal of clinical investigation, 2023-07, Vol.133 (13), p.1-22

2023

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FFPred 2.0: improved homology-independent prediction of gene ontology terms for eukaryotic protein sequences

PloS one, 2013-05, Vol.8 (5), p.e63754-e63754

2013

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Immune checkpoint inhibitor-induced colitis is mediated by polyfunctional lymphocytes and is dependent on an IL23/IFNγ axis

Nature communications, 2023-10, Vol.14 (1), p.6719-6719, Article 6719

2023

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Assessment of predictions in the model quality assessment category

Proteins, structure, function, and bioinformatics, 2007, Vol.69 (S8), p.175-183

2007

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Cancer-associated hypersialylated MUC1 drives the differentiation of human monocytes into macrophages with a pathogenic phenotype

Communications biology, 2020-11, Vol.3 (1), p.644-644, Article 644

2020

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DISOPRED3: precise disordered region predictions with annotated protein-binding activity

Bioinformatics, 2015-03, Vol.31 (6), p.857-863

2015

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Sa1857 A TRANSCRIPTIONAL MODULE ASSOCIATED WITH NEUTROPHIL DEGRANULATION IS HIGHLY CONSERVED ACROSS SPECIES AND IS A CORE MOLECULAR PATHWAY OF TREATMENT RESISTANCE IN ULCERATIVE COLITIS

Gastroenterology (New York, N.Y. 1943), 2023-05, Vol.164 (6), p.S-465-S-465

2023

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Tu1762 A CORE TRANSCRIPTIONAL RESISTOME, CHARACTERISED BY NEUTROPHIL DEGRANULATION AND EXTRACELLULAR MATRIX DYSREGULATION, PREDICTS RESISTANCE TO MULTIPLE THERAPIES IN UC

Gastroenterology (New York, N.Y. 1943), 2024-05, Vol.166 (5), p.S-1411-S-1411

2024

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Sa1859 EXTRACELLULAR MATRIX DYSREGULATION AND NEUTROPHIL DEGRANULATION ARE CORE PATHWAYS DRIVING TREATMENT RESISTANCE IN ULCERATIVE COLITIS

Gastroenterology (New York, N.Y. 1943), 2023-05, Vol.164 (6), p.S-466-S-466

2023

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Evaluation of predictions in the CASP10 model refinement category

Proteins, structure, function, and bioinformatics, 2014-02, Vol.82 (S2), p.98-111

2014

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Tu1761 GENE CORRELATION NETWORK ANALYSES REVEAL TRANSCRIPT MODULES AND PATHOGENIC MECHANISMS ASSOCIATED WITH RESISTANCE AND RESPONSE TO USTEKINUMAB THERAPY IN ULCERATIVE COLITIS

Gastroenterology (New York, N.Y. 1943), 2024-05, Vol.166 (5), p.S-1410-S-1410

2024

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Tu1734 BLOCKADE OF IL-27, BUT NOT IL-1B, ATTENUATES IMMUNE CHECKPOINT INHIBITOR COLITIS

Gastroenterology (New York, N.Y. 1943), 2024-05, Vol.166 (5), p.S-1399-S-1399

2024

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FFPred 3: feature-based function prediction for all Gene Ontology domains

Scientific reports, 2016-08, Vol.6 (1), p.31865-31865, Article 31865

2016

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Sa1931 MOLECULAR PROFILING OF FFPE TISSUE IN PATIENTS WITH IMMUNE CHECKPOINT INHIBITOR INDUCED COLITIS HIGHLIGHTS NEW THERAPEUTIC TARGETS

Gastroenterology (New York, N.Y. 1943), 2023-05, Vol.164 (6), p.S-485-S-485

2023

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Computational Methods for Annotation Transfers from Sequence

Methods in molecular biology (Clifton, N.J.), 2017, Vol.1446, p.55

2017

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Mo1503: DYSREGULATED MICROBE-HOST METABOLISM UNDERPINS IMMUNE ACTIVATION IN A MICROBIOTA-DEPENDENT MODEL OF ULCERATIVE COLITIS

Gastroenterology (New York, N.Y. 1943), 2022-05, Vol.162 (7), p.S-793-S-793

2022

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Su1117: HARNESSING TRANSCRIPTOMIC PROFILING TO DEFINE THE BIOLOGICAL MECHANISMS CONTRIBUTING TO PERIANAL FISTULIZING DISEASE

Gastroenterology (New York, N.Y. 1943), 2022-05, Vol.162 (7), p.S-509-S-509

2022

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Critical assessment of protein intrinsic disorder prediction

Nature methods, 2021-05, Vol.18 (5), p.472

2021

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The contribution of intrinsic disorder prediction to the elucidation of protein function

Current opinion in structural biology, 2013-06, Vol.23 (3), p.467-472

2013

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PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

Predicting human protein function with multi-task deep neural networks

Interleukin-22 regulates neutrophil recruitment in ulcerative colitis and is associated with resistance to ustekinumab therapy

Using deep maxout neural networks to improve the accuracy of function prediction from protein interaction networks

Tumor-activated lymph node fibroblasts suppress T cell function in diffuse large B cell lymphoma

FFPred 2.0: improved homology-independent prediction of gene ontology terms for eukaryotic protein sequences

Immune checkpoint inhibitor-induced colitis is mediated by polyfunctional lymphocytes and is dependent on an IL23/IFNγ axis

Assessment of predictions in the model quality assessment category

Cancer-associated hypersialylated MUC1 drives the differentiation of human monocytes into macrophages with a pathogenic phenotype

DISOPRED3: precise disordered region predictions with annotated protein-binding activity

Sa1857 A TRANSCRIPTIONAL MODULE ASSOCIATED WITH NEUTROPHIL DEGRANULATION IS HIGHLY CONSERVED ACROSS SPECIES AND IS A CORE MOLECULAR PATHWAY OF TREATMENT RESISTANCE IN ULCERATIVE COLITIS

P1211: TUMOR‐ACTIVATED LYMPH NODE FIBROBLASTS SUPPRESS T CELL FUNCTION IN DIFFUSE LARGE B CELL LYMPHOMA

Tu1762 A CORE TRANSCRIPTIONAL RESISTOME, CHARACTERISED BY NEUTROPHIL DEGRANULATION AND EXTRACELLULAR MATRIX DYSREGULATION, PREDICTS RESISTANCE TO MULTIPLE THERAPIES IN UC

Sa1859 EXTRACELLULAR MATRIX DYSREGULATION AND NEUTROPHIL DEGRANULATION ARE CORE PATHWAYS DRIVING TREATMENT RESISTANCE IN ULCERATIVE COLITIS

Evaluation of predictions in the CASP10 model refinement category

Tu1761 GENE CORRELATION NETWORK ANALYSES REVEAL TRANSCRIPT MODULES AND PATHOGENIC MECHANISMS ASSOCIATED WITH RESISTANCE AND RESPONSE TO USTEKINUMAB THERAPY IN ULCERATIVE COLITIS

Tu1734 BLOCKADE OF IL-27, BUT NOT IL-1B, ATTENUATES IMMUNE CHECKPOINT INHIBITOR COLITIS

FFPred 3: feature-based function prediction for all Gene Ontology domains

Sa1931 MOLECULAR PROFILING OF FFPE TISSUE IN PATIENTS WITH IMMUNE CHECKPOINT INHIBITOR INDUCED COLITIS HIGHLIGHTS NEW THERAPEUTIC TARGETS

Computational Methods for Annotation Transfers from Sequence

Mo1503: DYSREGULATED MICROBE-HOST METABOLISM UNDERPINS IMMUNE ACTIVATION IN A MICROBIOTA-DEPENDENT MODEL OF ULCERATIVE COLITIS

Su1117: HARNESSING TRANSCRIPTOMIC PROFILING TO DEFINE THE BIOLOGICAL MECHANISMS CONTRIBUTING TO PERIANAL FISTULIZING DISEASE

Critical assessment of protein intrinsic disorder prediction

Interleukin-22 orchestrates a pathological endoplasmic reticulum stress response transcriptional programme in colonic epithelial cells

The contribution of intrinsic disorder prediction to the elucidation of protein function

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