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Research in Computational Molecular Biology: 23rd Annual International Conference, RECOMB 2019, Washington, DC, USA, May 5-8, 2019, Proceedings

1st ed. 2019., 2019

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Going the distance for protein function prediction: a new distance metric for protein interaction networks

PloS one, 2013-10, Vol.8 (10), p.e76339-e76339

2013

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Compressive genomics for protein databases

Bioinformatics, 2013-07, Vol.29 (13), p.i283-i290

2013

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BETASCAN: probable beta-amyloids identified by pairwise probabilistic analysis

PLoS computational biology, 2009-03, Vol.5 (3), p.e1000333-e1000333

2009

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Formatt: Correcting protein multiple structural alignments by incorporating sequence alignment

BMC bioinformatics, 2012-10, Vol.13 (1), p.259-259, Article 259

2012

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GLIDE: combining local methods and diffusion state embeddings to predict missing interactions in biological networks

Bioinformatics (Oxford, England), 2020-07, Vol.36 (Supplement_1), p.i464-i473

2020

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Fault tolerance in protein interaction networks: stable bipartite subgraphs and redundant pathways

PloS one, 2009-04, Vol.4 (4), p.e5364-e5364

2009

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Efficient Construction of a Complete Index for Pan-Genomics Read Alignment

Research in Computational Molecular Biology, 2019, Vol.11467, p.158-173

2019

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RENET: A Deep Learning Approach for Extracting Gene-Disease Associations from Literature

Research in Computational Molecular Biology, 2019, Vol.11467, p.272-284

2019

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New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence

Bioinformatics (Oxford, England), 2014-06, Vol.30 (12), p.i219-i227

2014

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GLIDER: function prediction from GLIDE-based neighborhoods

Bioinformatics, 2022-06, Vol.38 (13), p.3395-3406

2022

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Majority Vote Cascading: A Semi-Supervised Framework for Improving Protein Function Prediction

IEEE/ACM transactions on computational biology and bioinformatics, 2022-07, Vol.19 (4), p.1933-1945

2022

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Correction: Going the Distance for Protein Function Prediction: A New Distance Metric for Protein Interaction Networks

PloS one, 2013-10, Vol.8 (10)

2013

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MethCP: Differentially Methylated Region Detection with Change Point Models

Research in Computational Molecular Biology, 2019, Vol.11467, p.68-84

2019

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Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data

BMC bioinformatics, 2013-01, Vol.14 (1), p.23-23, Article 23

2013

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Bioengineered models of Parkinson’s disease using patient-derived dopaminergic neurons exhibit distinct biological profiles in a 3D microenvironment

Cellular and molecular life sciences : CMLS, 2022-02, Vol.79 (2), p.78-78, Article 78

2022

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Detangling PPI networks to uncover functionally meaningful clusters

BMC systems biology, 2018-03, Vol.12 (Suppl 3), p.24-24

2018

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Computing the diffusion state distance on graphs via algebraic multigrid and random projections

Numerical linear algebra with applications, 2018-05, Vol.25 (3), p.n/a

2018

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WHEN SHOULD WE NOT TRANSFER FUNCTIONAL ANNOTATION BETWEEN SEQUENCE PARALOGS?

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 2017, Vol.22, p.15

2017

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Retraction Note: detangling PPI networks to uncover functionally meaningful clusters

BMC systems biology, 2018-11, Vol.12 (1), p.113-113, Article 113

2018

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On the Complexity of Sequence to Graph Alignment

Research in Computational Molecular Biology, 2019, Vol.11467, p.85-100

2019

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SMURFLite: combining simplified Markov random fields with simulated evolution improves remote homology detection for beta-structural proteins into the twilight zone

Bioinformatics (Oxford, England), 2012-05, Vol.28 (9), p.1216-1222

2012

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An Efficient, Scalable and Exact Representation of High-Dimensional Color Information Enabled via de Bruijn Graph Search

Research in Computational Molecular Biology, 2019, Vol.11467, p.1-18

2019

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Bioinformatics of corals: Investigating heterogeneous omics data from coral holobionts for insight into reef health and resillience

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 2021, Vol.26, p.336

2021

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Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data

Research in Computational Molecular Biology, 2019, Vol.11467, p.174-189

2019

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Research in Computational Molecular Biology: 23rd Annual International Conference, RECOMB 2019, Washington, DC, USA, May 5-8, 2019, Proceedings

Going the distance for protein function prediction: a new distance metric for protein interaction networks

Compressive genomics for protein databases

BETASCAN: probable beta-amyloids identified by pairwise probabilistic analysis

Formatt: Correcting protein multiple structural alignments by incorporating sequence alignment

GLIDE: combining local methods and diffusion state embeddings to predict missing interactions in biological networks

Fault tolerance in protein interaction networks: stable bipartite subgraphs and redundant pathways

Efficient Construction of a Complete Index for Pan-Genomics Read Alignment

RENET: A Deep Learning Approach for Extracting Gene-Disease Associations from Literature

New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence

GLIDER: function prediction from GLIDE-based neighborhoods

Majority Vote Cascading: A Semi-Supervised Framework for Improving Protein Function Prediction

Correction: Going the Distance for Protein Function Prediction: A New Distance Metric for Protein Interaction Networks

MethCP: Differentially Methylated Region Detection with Change Point Models

Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data

Bioengineered models of Parkinson’s disease using patient-derived dopaminergic neurons exhibit distinct biological profiles in a 3D microenvironment

Detangling PPI networks to uncover functionally meaningful clusters

Computing the diffusion state distance on graphs via algebraic multigrid and random projections

WHEN SHOULD WE NOT TRANSFER FUNCTIONAL ANNOTATION BETWEEN SEQUENCE PARALOGS?

Retraction Note: detangling PPI networks to uncover functionally meaningful clusters

On the Complexity of Sequence to Graph Alignment

SMURFLite: combining simplified Markov random fields with simulated evolution improves remote homology detection for beta-structural proteins into the twilight zone

An Efficient, Scalable and Exact Representation of High-Dimensional Color Information Enabled via de Bruijn Graph Search

Bioinformatics of corals: Investigating heterogeneous omics data from coral holobionts for insight into reef health and resillience

Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data

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