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MHC class I-associated peptides derive from selective regions of the human genome

The Journal of clinical investigation, 2016-12, Vol.126 (12), p.4690-4701

2016

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Most non-canonical proteins uniquely populate the proteome or immunopeptidome

Cell reports (Cambridge), 2021-03, Vol.34 (10), p.108815-108815, Article 108815

2021

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Phosphoproteome dynamics reveal novel ERK1/2 MAP kinase substrates with broad spectrum of functions

Molecular systems biology, 2013-05, Vol.9 (1), p.669-n/a

2013

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CAMAP: Artificial neural networks unveil the role of codon arrangement in modulating MHC-I peptides presentation

PLoS computational biology, 2021-10, Vol.17 (10), p.e1009482-e1009482

2021

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Combined Enzymatic and Data Mining Approaches for Comprehensive Phosphoproteome Analyses

Molecular & cellular proteomics, 2008-04, Vol.7 (4), p.645-660

2008

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Artifactual Sulfation of Silver-stained Proteins

Molecular & cellular proteomics, 2009-03, Vol.8 (3), p.506-518

2009

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Extending the Comprehensiveness of Immunopeptidome Analyses Using Isobaric Peptide Labeling

Analytical chemistry (Washington), 2020-07, Vol.92 (13), p.9194-9204

2020

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The Phagosomal Proteome in Interferon-γ-Activated Macrophages

Immunity (Cambridge, Mass.), 2009-01, Vol.30 (1), p.143-154

2009

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SUMO Proteomics Analyses Identify Protein Inhibitor of Activated STAT-Mediated Regulatory Networks Involved in Cell Cycle and Cell Proliferation

Journal of proteome research, 2023-03, Vol.22 (3), p.812-825

2023

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Immunopeptidomic Analyses of Colorectal Cancers With and Without Microsatellite Instability

Molecular & cellular proteomics, 2022-05, Vol.21 (5), p.100228-100228, Article 100228

2022

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Comparison of the MHC I Immunopeptidome Repertoire of B‐Cell Lymphoblasts Using Two Isolation Methods

Proteomics (Weinheim), 2018-06, Vol.18 (12), p.e1700251-n/a

2018

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Gpr161 anchoring of PKA consolidates GPCR and cAMP signaling

Proceedings of the National Academy of Sciences - PNAS, 2016-07, Vol.113 (28), p.7786-7791

2016

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A Novel Proteomics Approach to Identify SUMOylated Proteins and Their Modification Sites in Human Cells

Molecular & cellular proteomics, 2011-02, Vol.10 (2), p.S1-S15

2011

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Breast cancer immunopeptidomes contain numerous shared tumor antigens

The Journal of clinical investigation, 2024-01, Vol.134 (1), p.1-13

2024

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MhcVizPipe: A Quality Control Software for Rapid Assessment of Small- to Large-Scale Immunopeptidome Datasets

Molecular & cellular proteomics, 2022-01, Vol.21 (1), p.100178-100178, Article 100178

2022

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Proteogenomics Uncovers a Vast Repertoire of Shared Tumor-Specific Antigens in Ovarian Cancer

Cancer immunology research, 2020-04, Vol.8 (4), p.544-555

2020

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CLMSVault: A Software Suite for Protein Cross-Linking Mass-Spectrometry Data Analysis and Visualization

Journal of proteome research, 2017-07, Vol.16 (7), p.2645-2652

2017

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CAMAP: Artificial neural networks unveil the role of codon arrangement in modulating MHC-I peptides presentation

PLoS computational biology, 2021-10, Vol.17 (10)

2021

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Induced pluripotent stem cells display a distinct set of MHC I-associated peptides shared by human cancers

Cell reports (Cambridge), 2022-08, Vol.40 (7), p.111241-111241, Article 111241

2022

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Combined enzymatic and data mining approaches for comprehensive phosphoproteome analyses: application to cell signaling events of interferon-gamma-stimulated macrophages

Molecular & cellular proteomics, 2008-04, Vol.7 (4), p.645-660

2008

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Abstract 579: Immune features and neoantigen recognition in mismatch repair-proficient colorectal cancer liver metastases

Cancer research (Chicago, Ill.), 2019-07, Vol.79 (13_Supplement), p.579-579

2019

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Occurrence and Detection of Phosphopeptide Isomers in Large-Scale Phosphoproteomics Experiments

Journal of proteome research, 2012-07, Vol.11 (7), p.3753-3765

2012

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ProteoConnections: A bioinformatics platform to facilitate proteome and phosphoproteome analyses

Proteomics (Weinheim), 2011-07, Vol.11 (13), p.2654-2671

2011

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Phosphorylation network rewiring by gene duplication

Molecular systems biology, 2011-07, Vol.7 (1), p.504-n/a

2011

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1411 Breast cancer immunopeptidomes contain numerous shared tumor antigens

Journal for immunotherapy of cancer, 2022, Vol.10 (Suppl 2), p.A1467-A1467

2022

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MHC class I-associated peptides derive from selective regions of the human genome

Most non-canonical proteins uniquely populate the proteome or immunopeptidome

Phosphoproteome dynamics reveal novel ERK1/2 MAP kinase substrates with broad spectrum of functions

CAMAP: Artificial neural networks unveil the role of codon arrangement in modulating MHC-I peptides presentation

Combined Enzymatic and Data Mining Approaches for Comprehensive Phosphoproteome Analyses

Artifactual Sulfation of Silver-stained Proteins

Extending the Comprehensiveness of Immunopeptidome Analyses Using Isobaric Peptide Labeling

The Phagosomal Proteome in Interferon-γ-Activated Macrophages

SUMO Proteomics Analyses Identify Protein Inhibitor of Activated STAT-Mediated Regulatory Networks Involved in Cell Cycle and Cell Proliferation

Immunopeptidomic Analyses of Colorectal Cancers With and Without Microsatellite Instability

Comparison of the MHC I Immunopeptidome Repertoire of B‐Cell Lymphoblasts Using Two Isolation Methods

Gpr161 anchoring of PKA consolidates GPCR and cAMP signaling

A Novel Proteomics Approach to Identify SUMOylated Proteins and Their Modification Sites in Human Cells

Breast cancer immunopeptidomes contain numerous shared tumor antigens

MhcVizPipe: A Quality Control Software for Rapid Assessment of Small- to Large-Scale Immunopeptidome Datasets

Proteogenomics Uncovers a Vast Repertoire of Shared Tumor-Specific Antigens in Ovarian Cancer

CLMSVault: A Software Suite for Protein Cross-Linking Mass-Spectrometry Data Analysis and Visualization

CAMAP: Artificial neural networks unveil the role of codon arrangement in modulating MHC-I peptides presentation

Induced pluripotent stem cells display a distinct set of MHC I-associated peptides shared by human cancers

Combined enzymatic and data mining approaches for comprehensive phosphoproteome analyses: application to cell signaling events of interferon-gamma-stimulated macrophages

Abstract 579: Immune features and neoantigen recognition in mismatch repair-proficient colorectal cancer liver metastases

Occurrence and Detection of Phosphopeptide Isomers in Large-Scale Phosphoproteomics Experiments

ProteoConnections: A bioinformatics platform to facilitate proteome and phosphoproteome analyses

Phosphorylation network rewiring by gene duplication

1411 Breast cancer immunopeptidomes contain numerous shared tumor antigens

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