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Interpretable dimensionality reduction of single cell transcriptome data with deep generative models

Nature communications, 2018-05, Vol.9 (1), p.2002-13, Article 2002

2018

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RNA STRAND: the RNA secondary structure and statistical analysis database

BMC bioinformatics, 2008-08, Vol.9 (1), p.340-340, Article 340

2008

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Movement of Aquatic Mercury Through Terrestrial Food Webs

Science (American Association for the Advancement of Science), 2008-04, Vol.320 (5874), p.335-335

2008

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Algorithmic self-assembly of DNA Sierpinski triangles

PLoS biology, 2004-12, Vol.2 (12), p.e424-e424

2004

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Feather Growth Influences Blood Mercury Level of Young Songbirds

Environmental toxicology and chemistry, 2009-02, Vol.28 (2), p.395-401

2009

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Mercury Exposure Affects the Reproductive Success of a Free-Living Terrestrial Songbird, the Carolina Wren (Thryothorus ludovicianus)

The Auk, 2011-10, Vol.128 (4), p.759-769

2011

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Improved free energy parameters for RNA pseudoknotted secondary structure prediction

RNA (Cambridge), 2010-01, Vol.16 (1), p.26-42

2010

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Analysis of energy-based algorithms for RNA secondary structure prediction

BMC bioinformatics, 2012-02, Vol.13 (1), p.22-22, Article 22

2012

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DNA Computing: 6th InternationalWorkshop on DNA-Based Computers, DNA 2000 Leiden, The Netherlands, June 13–17, 2000 Revised Papers

2001

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Computational approaches for RNA energy parameter estimation

RNA (Cambridge), 2010-12, Vol.16 (12), p.2304-2318

2010

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HotKnots: heuristic prediction of RNA secondary structures including pseudoknots

RNA (Cambridge), 2005-10, Vol.11 (10), p.1494-1504

2005

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The determination of RNA folding nearest neighbor parameters

Methods in molecular biology (Clifton, N.J.), 2014-01, Vol.1097, p.45

2014

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Efficient parameter estimation for RNA secondary structure prediction

Bioinformatics, 2007-07, Vol.23 (13), p.i19-i28

2007

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Secondary Structure Prediction of Interacting RNA Molecules

Journal of molecular biology, 2005-02, Vol.345 (5), p.987-1001

2005

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Designed DNA molecules: principles and applications of molecular nanotechnology

Nature reviews. Genetics, 2006-07, Vol.7 (7), p.565-575

Condon, Anne

2006

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Algorithms for graph partitioning on the planted partition model

Random structures & algorithms, 2001-03, Vol.18 (2), p.116-140

2001

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Mercury exposure in terrestrial birds far downstream of an historical point source

Environmental pollution (1987), 2011-12, Vol.159 (12), p.3302-3308

2011

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DNA computing on surfaces

Nature (London), 2000-01, Vol.403 (6766), p.175-179

2000

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A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures

BMC bioinformatics, 2014-05, Vol.15 (1), p.147-147, Article 147

2014

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Unconventional Computation and Natural Computation: 15th International Conference, UCNC 2016, Manchester, UK, July 11-15, 2016, Proceedings

1st ed. 2016, 2016

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Algorithmic Bioprocesses

1. Aufl., 2009

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A New Algorithm for RNA Secondary Structure Design

Journal of molecular biology, 2004-02, Vol.336 (3), p.607-624

2004

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Computational RNA secondary structure design: empirical complexity and improved methods

BMC bioinformatics, 2007-01, Vol.8 (1), p.34-34, Article 34

2007

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densityCut: an efficient and versatile topological approach for automatic clustering of biological data

Bioinformatics (Oxford, England), 2016-09, Vol.32 (17), p.2567-2576

2016

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Molecular programming: DNA and the brain

Nature (London), 2011-07, Vol.475 (7356), p.304-305

Condon, Anne

2011

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Interpretable dimensionality reduction of single cell transcriptome data with deep generative models

RNA STRAND: the RNA secondary structure and statistical analysis database

Movement of Aquatic Mercury Through Terrestrial Food Webs

Algorithmic self-assembly of DNA Sierpinski triangles

Feather Growth Influences Blood Mercury Level of Young Songbirds

Mercury Exposure Affects the Reproductive Success of a Free-Living Terrestrial Songbird, the Carolina Wren (Thryothorus ludovicianus)

Improved free energy parameters for RNA pseudoknotted secondary structure prediction

Analysis of energy-based algorithms for RNA secondary structure prediction

DNA Computing: 6th InternationalWorkshop on DNA-Based Computers, DNA 2000 Leiden, The Netherlands, June 13–17, 2000 Revised Papers

Computational approaches for RNA energy parameter estimation

HotKnots: heuristic prediction of RNA secondary structures including pseudoknots

The determination of RNA folding nearest neighbor parameters

Efficient parameter estimation for RNA secondary structure prediction

Secondary Structure Prediction of Interacting RNA Molecules

Designed DNA molecules: principles and applications of molecular nanotechnology

Algorithms for graph partitioning on the planted partition model

Mercury exposure in terrestrial birds far downstream of an historical point source

DNA computing on surfaces

A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures

Unconventional Computation and Natural Computation: 15th International Conference, UCNC 2016, Manchester, UK, July 11-15, 2016, Proceedings

Algorithmic Bioprocesses

A New Algorithm for RNA Secondary Structure Design

Computational RNA secondary structure design: empirical complexity and improved methods

densityCut: an efficient and versatile topological approach for automatic clustering of biological data

Molecular programming: DNA and the brain

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