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Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica grown at contrasted temperatures

The New phytologist, 2013-10, Vol.200 (1), p.251-260

2013

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Development of a rapid and efficient DNA-based method to detect and quantify adulterations in coffee (Arabica versus Robusta)

Food control, 2018-06, Vol.88, p.198-206

2018

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Plant population dynamics on oceanic islands during the Late Quaternary climate changes: genetic evidence from a tree species (Coffea mauritiana) in Reunion Island

The New phytologist, 2019-10, Vol.224 (2), p.974-986

2019

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Genome rearrangements derived from homoeologous recombination following allopolyploidy speciation in coffee

The Plant journal : for cell and molecular biology, 2014-05, Vol.78 (4), p.674-685

2014

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Multi-Approach Analysis Reveals Local Adaptation in a Widespread Forest Tree of Reunion Island

Plant and cell physiology, 2021-05, Vol.62 (2), p.280-292

2021

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Regulatory divergence between parental alleles determines gene expression patterns in hybrids

Genome biology and evolution, 2015-04, Vol.7 (4), p.1110-1121

2015

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Agrobacterium-mediated genetic transformation of Coffea arabica (L.) is greatly enhanced by using established embryogenic callus cultures

BMC plant biology, 2011-05, Vol.11 (1), p.92-92, Article 92

2011

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Inter-genomic DNA Exchanges and Homeologous Gene Silencing Shaped the Nascent Allopolyploid Coffee Genome (Coffea arabica L.)

G3 : genes - genomes - genetics, 2016-09, Vol.6 (9), p.2937-2948

2016

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Genetic diversity and population divergences of an indigenous tree (Coffea mauritiana) in Reunion Island: role of climatic and geographical factors

Heredity, 2019-06, Vol.122 (6), p.833-847

2019

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New cup out of old coffee: contribution of parental gene expression legacy to phenotypic novelty in coffee beans of the allopolyploid Coffea arabica L

Annals of botany, 2023-02, Vol.131 (1), p.157-170

2023

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Genome evolution in diploid and tetraploid Coffea species as revealed by comparative analysis of orthologous genome segments

Plant molecular biology, 2012, Vol.78 (1-2), p.135-145

2012

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Organization and molecular evolution of a disease-resistance gene cluster in coffee trees

BMC genomics, 2011-05, Vol.12 (1), p.240-240, Article 240

2011

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Seed comparative genomics in three coffee species identify desiccation tolerance mechanisms in intermediate seeds

Journal of experimental botany, 2020-02, Vol.71 (4), p.1418-1433

2020

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SNiPloid: A Utility to Exploit High-Throughput SNP Data Derived from RNA-Seq in Allopolyploid Species

International Journal of Plant Genomics, 2013, Vol.2013 (2013), p.28-33

2013

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The 'PUCE CAFE' Project: the first 15K coffee microarray, a new tool for discovering candidate genes correlated to agronomic and quality traits

BMC genomics, 2011-01, Vol.12 (1), p.5-5, Article 5

2011

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Genomic expression dominance in the natural allopolyploid Coffea arabica is massively affected by growth temperature

The New phytologist, 2011-11, Vol.192 (3), p.760-774

2011

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Comparative sequence analyses indicate that Coffea (Asterids) and Vitis (Rosids) derive from the same paleo-hexaploid ancestral genome

Molecular genetics and genomics : MGG, 2010-05, Vol.283 (5), p.493-501

2010

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Differences in evolution rates among eudicotyledon species observed by analysis of protein divergence

The Journal of heredity, 2013-07, Vol.104 (4), p.459-464

2013

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Homeologous Gene Expression in Response to Growing Temperature in a Recent Allopolyploid (Coffea arabica L.)

The Journal of heredity, 2012, Vol.103 (1), p.36-46

2012

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Chromosome-scale genome assembly and annotation of Paspalum notatum Flüggé var. saurae

Scientific data, 2024-08, Vol.11 (1), p.891-12

2024

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BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution

Plant molecular biology, 2013-10, Vol.83 (3), p.177-189

2013

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Analysis of alien introgression in coffee tree (Coffea arabica L.)

Molecular breeding, 2011-02, Vol.27 (2), p.223-232

2011

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Adaptive radiation in Coffea subgenus Coffea L. (Rubiaceae) in Africa and Madagascar

Plant systematics and evolution, 2010-03, Vol.285 (1-2), p.51-64

2010

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Comparison between a coffee single copy chromosomal region and Arabidopsis duplicated counterparts evidenced high level synteny between the coffee genome and the ancestral Arabidopsis genome

Plant molecular biology, 2007-08, Vol.64 (6), p.699-711

2007

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Genetic and physical mapping of the SH3 region that confers resistance to leaf rust in coffee tree (Coffea arabica L.)

Tree genetics & genomes, 2010-12, Vol.6 (6), p.973-980

2010

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Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica grown at contrasted temperatures

Development of a rapid and efficient DNA-based method to detect and quantify adulterations in coffee (Arabica versus Robusta)

Plant population dynamics on oceanic islands during the Late Quaternary climate changes: genetic evidence from a tree species (Coffea mauritiana) in Reunion Island

Genome rearrangements derived from homoeologous recombination following allopolyploidy speciation in coffee

Multi-Approach Analysis Reveals Local Adaptation in a Widespread Forest Tree of Reunion Island

Regulatory divergence between parental alleles determines gene expression patterns in hybrids

Agrobacterium-mediated genetic transformation of Coffea arabica (L.) is greatly enhanced by using established embryogenic callus cultures

Inter-genomic DNA Exchanges and Homeologous Gene Silencing Shaped the Nascent Allopolyploid Coffee Genome (Coffea arabica L.)

Genetic diversity and population divergences of an indigenous tree (Coffea mauritiana) in Reunion Island: role of climatic and geographical factors

New cup out of old coffee: contribution of parental gene expression legacy to phenotypic novelty in coffee beans of the allopolyploid Coffea arabica L

Genome evolution in diploid and tetraploid Coffea species as revealed by comparative analysis of orthologous genome segments

Organization and molecular evolution of a disease-resistance gene cluster in coffee trees

Seed comparative genomics in three coffee species identify desiccation tolerance mechanisms in intermediate seeds

SNiPloid: A Utility to Exploit High-Throughput SNP Data Derived from RNA-Seq in Allopolyploid Species

The 'PUCE CAFE' Project: the first 15K coffee microarray, a new tool for discovering candidate genes correlated to agronomic and quality traits

Genomic expression dominance in the natural allopolyploid Coffea arabica is massively affected by growth temperature

Comparative sequence analyses indicate that Coffea (Asterids) and Vitis (Rosids) derive from the same paleo-hexaploid ancestral genome

Differences in evolution rates among eudicotyledon species observed by analysis of protein divergence

Homeologous Gene Expression in Response to Growing Temperature in a Recent Allopolyploid (Coffea arabica L.)

Chromosome-scale genome assembly and annotation of Paspalum notatum Flüggé var. saurae

BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution

Analysis of alien introgression in coffee tree (Coffea arabica L.)

Adaptive radiation in Coffea subgenus Coffea L. (Rubiaceae) in Africa and Madagascar

Comparison between a coffee single copy chromosomal region and Arabidopsis duplicated counterparts evidenced high level synteny between the coffee genome and the ancestral Arabidopsis genome

Genetic and physical mapping of the SH3 region that confers resistance to leaf rust in coffee tree (Coffea arabica L.)

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