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Getting started in text mining

PLoS computational biology, 2008-01, Vol.4 (1), p.e20-e20

2008

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Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles

BMC bioinformatics, 2017-08, Vol.18 (1), p.372-372, Article 372

2017

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The structural and content aspects of abstracts versus bodies of full text journal articles are different

BMC bioinformatics, 2010-09, Vol.11 (1), p.492-492, Article 492

2010

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Open Agile text mining for bioinformatics: the PubAnnotation ecosystem

Bioinformatics, 2019-11, Vol.35 (21), p.4372-4380

2019

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A nonparametric Bayesian method of translating machine learning scores to probabilities in clinical decision support

BMC bioinformatics, 2017-08, Vol.18 (1), p.361-361, Article 361

2017

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U-Compare: share and compare text mining tools with UIMA

Bioinformatics, 2009-08, Vol.25 (15), p.1997-1998

2009

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Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD)

BMC bioinformatics, 2009-10, Vol.10 (1), p.326-326, Article 326

2009

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P-Hacking Lexical Richness Through Definitions of "Type" and "Token"

Studies in health technology and informatics, 2019-08, Vol.264, p.1433

2019

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The textual characteristics of traditional and Open Access scientific journals are similar

BMC bioinformatics, 2009-06, Vol.10 (1), p.183-183, Article 183

2009

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MutationFinder: a high-performance system for extracting point mutation mentions from text

Bioinformatics, 2007-07, Vol.23 (14), p.1862-1865

2007

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Chapter 16: text mining for translational bioinformatics

PLoS computational biology, 2013-04, Vol.9 (4), p.e1003044-e1003044

2013

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OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression

BMC bioinformatics, 2008-01, Vol.9 (1), p.78-78, Article 78

2008

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Nominalization and alternations in biomedical language

PloS one, 2008-09, Vol.3 (9), p.e3158-e3158

2008

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Assessing the similarity of surface linguistic features related to epilepsy across pediatric hospitals

Journal of the American Medical Informatics Association : JAMIA, 2014-09, Vol.21 (5), p.866-870

2014

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GeneRIF quality assurance as summary revision

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 2007, p.269

2007

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Mining the pharmacogenomics literature--a survey of the state of the art

Briefings in bioinformatics, 2012-07, Vol.13 (4), p.460-494

2012

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Amazon Mechanical Turk: Gold Mine or Coal Mine?

Computational linguistics - Association for Computational Linguistics, 2011-06, Vol.37 (2), p.413-420

2011

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A Modular Ontology for Modeling Service Provision in a Communication Network for Coordination of Care

Studies in health technology and informatics, 2018, Vol.247, p.890

2018

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Biomedical Language Processing: What's Beyond PubMed?

Molecular cell, 2006-03, Vol.21 (5), p.589-594

2006

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Sentiment Analysis of Suicide Notes: A Shared Task

Biomedical Informatics Insights, 2012-01, Vol.2012 (Suppl. 1), p.3-16

2012

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A critical review of PASBio's argument structures for biomedical verbs

BMC bioinformatics, 2006-11, Vol.7 Suppl 3 (S3), p.S5-S5, Article S5

2006

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Current issues in biomedical text mining and natural language processing

Journal of biomedical informatics, 2009-10, Vol.42 (5), p.757-759

2009

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Concept annotation in the CRAFT corpus

BMC bioinformatics, 2012-07, Vol.13 (1), p.161-161, Article 161

2012

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Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters

BMC bioinformatics, 2014-02, Vol.15 (1), p.59-59, Article 59

2014

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Manual curation is not sufficient for annotation of genomic databases

Bioinformatics, 2007-07, Vol.23 (13), p.i41-i48

2007

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Getting started in text mining

Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles

The structural and content aspects of abstracts versus bodies of full text journal articles are different

Open Agile text mining for bioinformatics: the PubAnnotation ecosystem

A nonparametric Bayesian method of translating machine learning scores to probabilities in clinical decision support

U-Compare: share and compare text mining tools with UIMA

Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD)

P-Hacking Lexical Richness Through Definitions of "Type" and "Token"

The textual characteristics of traditional and Open Access scientific journals are similar

MutationFinder: a high-performance system for extracting point mutation mentions from text

Chapter 16: text mining for translational bioinformatics

OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression

Nominalization and alternations in biomedical language

Assessing the similarity of surface linguistic features related to epilepsy across pediatric hospitals

GeneRIF quality assurance as summary revision

Mining the pharmacogenomics literature--a survey of the state of the art

Amazon Mechanical Turk: Gold Mine or Coal Mine?

A Modular Ontology for Modeling Service Provision in a Communication Network for Coordination of Care

Biomedical Language Processing: What's Beyond PubMed?

Sentiment Analysis of Suicide Notes: A Shared Task

A critical review of PASBio's argument structures for biomedical verbs

Current issues in biomedical text mining and natural language processing

Concept annotation in the CRAFT corpus

Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters

Manual curation is not sufficient for annotation of genomic databases

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