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Biopython: freely available Python tools for computational molecular biology and bioinformatics

Bioinformatics, 2009-06, Vol.25 (11), p.1422-1423

2009

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Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

BMC genomics, 2016-03, Vol.17 (153), p.172-172, Article 172

2016

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Bio.Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython

BMC bioinformatics, 2012-08, Vol.13 (1), p.209-209, Article 209

2012

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Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus

PLoS pathogens, 2011-09, Vol.7 (9), p.e1002219-e1002219

2011

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Identification and characterization of parasitism genes from the pinewood nematode Bursaphelenchus xylophilus reveals a multilayered detoxification strategy

Molecular plant pathology, 2016-02, Vol.17 (2), p.286-295

2016

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Identification and localisation of the NB-LRR gene family within the potato genome

BMC genomics, 2012-02, Vol.13 (1), p.75-75, Article 75

2012

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Distinct circular single-stranded DNA viruses exist in different soil types

Applied and Environmental Microbiology, 2015-06, Vol.81 (12), p.3934-3945

2015

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THAPBI PICT-a fast, cautious, and accurate metabarcoding analysis pipeline

PeerJ (San Francisco, CA), 2023-08, Vol.11, p.e15648-e15648, Article e15648

2023

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Raspberry leaf blotch virus, a putative new member of the genus Emaravirus, encodes a novel genomic RNA

Journal of general virology, 2012-02, Vol.93 (Pt 2), p.430-437

2012

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Evidence for an Opportunistic and Endophytic Lifestyle of the Bursaphelenchus xylophilus-Associated Bacteria Serratia marcescens PWN146 Isolated from Wilting Pinus pinaster

Microbial ecology, 2016-10, Vol.72 (3), p.669-681

2016

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The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

Nucleic acids research, 2010-04, Vol.38 (6), p.1767-1771

2010

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The genome and genetics of a high oxidative stress tolerant Serratia sp. LCN16 isolated from the plant parasitic nematode Bursaphelenchus xylophilus

BMC genomics, 2016-04, Vol.17 (289), p.301-301, Article 301

2016

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Evolution of prokaryotic two-component systems: insights from comparative genomics

Amino acids, 2009-09, Vol.37 (3), p.459-466

2009

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Using Tablet for visual exploration of second-generation sequencing data

Briefings in bioinformatics, 2013-03, Vol.14 (2), p.193-202

2013

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Genome-Wide Identification of Genes Regulated by the Rcs Phosphorelay System in Erwinia amylovora

Molecular plant-microbe interactions, 2012, Vol.25 (1), p.6-17

2012

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NCBI BLAST+ integrated into Galaxy

Gigascience, 2015-08, Vol.4 (1), p.39-39, Article 39

2015

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The 2015 Bioinformatics Open Source Conference (BOSC 2015)

PLoS computational biology, 2016-02, Vol.12 (2), p.e1004691-e1004691

2016

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BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference [version 1; peer review: not peer reviewed]

F1000 research, 2021, Vol.10, p.1054

2021

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Two-component systems of the myxobacteria: structure, diversity and evolutionary relationships

Microbiology (Society for General Microbiology), 2008-02, Vol.154 (Pt 2), p.360-372

2008

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Shared Transcriptional Control and Disparate Gain and Loss of Aphid Parasitism Genes

Genome biology and evolution, 2018-10, Vol.10 (10), p.2716-2733

2018

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FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation

Journal of biomedical semantics, 2016-06, Vol.7 (1), p.39-39, Article 39

2016

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Newly identified RNAs of raspberry leaf blotch virus encoding a related group of proteins

Journal of general virology, 2015-11, Vol.96 (11), p.3432-3439

2015

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Comparison of transcript profiles in different life stages of the nematode Globodera pallida under different host potato genotypes

Molecular plant pathology, 2012-12, Vol.13 (9), p.1120-1134

2012

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Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology

PeerJ (San Francisco, CA), 2013-09, Vol.1, p.e167-e167

2013

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PHYTO-THREATS: Addressing Threats to UK Forests and Woodlands from Phytophthora; Identifying Risks of Spread in Trade and Methods for Mitigation

Forests, 2021-12, Vol.12 (12), p.1617

2021

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Biopython: freely available Python tools for computational molecular biology and bioinformatics

Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

Bio.Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython

Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus

Identification and characterization of parasitism genes from the pinewood nematode Bursaphelenchus xylophilus reveals a multilayered detoxification strategy

Identification and localisation of the NB-LRR gene family within the potato genome

Distinct circular single-stranded DNA viruses exist in different soil types

THAPBI PICT-a fast, cautious, and accurate metabarcoding analysis pipeline

Raspberry leaf blotch virus, a putative new member of the genus Emaravirus, encodes a novel genomic RNA

Evidence for an Opportunistic and Endophytic Lifestyle of the Bursaphelenchus xylophilus-Associated Bacteria Serratia marcescens PWN146 Isolated from Wilting Pinus pinaster

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

The genome and genetics of a high oxidative stress tolerant Serratia sp. LCN16 isolated from the plant parasitic nematode Bursaphelenchus xylophilus

Evolution of prokaryotic two-component systems: insights from comparative genomics

Using Tablet for visual exploration of second-generation sequencing data

Genome-Wide Identification of Genes Regulated by the Rcs Phosphorelay System in Erwinia amylovora

NCBI BLAST+ integrated into Galaxy

The 2015 Bioinformatics Open Source Conference (BOSC 2015)

BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference [version 1; peer review: not peer reviewed]

Two-component systems of the myxobacteria: structure, diversity and evolutionary relationships

Shared Transcriptional Control and Disparate Gain and Loss of Aphid Parasitism Genes

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation

Newly identified RNAs of raspberry leaf blotch virus encoding a related group of proteins

Comparison of transcript profiles in different life stages of the nematode Globodera pallida under different host potato genotypes

Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology

PHYTO-THREATS: Addressing Threats to UK Forests and Woodlands from Phytophthora; Identifying Risks of Spread in Trade and Methods for Mitigation

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