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Experimental and analytical tools for studying the human microbiome

Nature reviews. Genetics, 2012-01, Vol.13 (1), p.47-58

2012

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Intestinal Microbiota Is Influenced by Gender and Body Mass Index

PloS one, 2016-05, Vol.11 (5), p.e0154090-e0154090

2016

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Consumption of Two Healthy Dietary Patterns Restored Microbiota Dysbiosis in Obese Patients with Metabolic Dysfunction

Molecular nutrition & food research, 2017-12, Vol.61 (12), p.n/a

2017

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Anal gas evacuation and colonic microbiota in patients with flatulence: effect of diet

Gut, 2014-03, Vol.63 (3), p.401-408

2014

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Translating microbiome futures

Nature biotechnology, 2018-11, Vol.36 (11), p.1037-1042

2018

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Flexible taxonomic assignment of ambiguous sequencing reads

BMC bioinformatics, 2011-01, Vol.12 (1), p.8-8, Article 8

2011

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The Impact of the Gut Microbiota on Human Health: An Integrative View

Cell, 2012-03, Vol.148 (6), p.1258-1270

2012

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The role of the gut microbiome in systemic inflammatory disease

BMJ (Online), 2018-01, Vol.360, p.j5145

2018

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The microbiome in early life: implications for health outcomes

Nature medicine, 2016-07, Vol.22 (7), p.713-722

2016

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UCHIME improves sensitivity and speed of chimera detection

Bioinformatics, 2011-08, Vol.27 (16), p.2194-2200

2011

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Early-life gut microbiome composition and milk allergy resolution

Journal of allergy and clinical immunology, 2016-10, Vol.138 (4), p.1122-1130

2016

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Phylogenetic reconstruction from non-genomic data

Bioinformatics, 2007-01, Vol.23 (2), p.e110-e115

2007

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The Long-Term Stability of the Human Gut Microbiota

Science (American Association for the Advancement of Science), 2013-07, Vol.341 (6141), p.44-44

2013

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Interactions Between Diet and the Intestinal Microbiota Alter Intestinal Permeability and Colitis Severity in Mice

Gastroenterology (New York, N.Y. 1943), 2018-03, Vol.154 (4), p.1037-1046.e2

2018

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Gut microbiome of mothers delivering prematurely shows reduced diversity and lower relative abundance of Bifidobacterium and Streptococcus

PloS one, 2017-10, Vol.12 (10), p.e0184336-e0184336

2017

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Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer

Nature medicine, 2016-03, Vol.22 (3), p.250-253

2016

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The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites

Journal of allergy and clinical immunology, 2012-05, Vol.129 (5), p.1204-1208

2012

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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Nature biotechnology, 2013-09, Vol.31 (9), p.814-821

2013

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Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

Science (American Association for the Advancement of Science), 2011-05, Vol.332 (6032), p.970-974

2011

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Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States

Science (American Association for the Advancement of Science), 2013-11, Vol.342 (6158), p.621-624

2013

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Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities

PloS one, 2013-02, Vol.8 (2), p.e47879

2013

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Transient Inability to Manage Proteobacteria Promotes Chronic Gut Inflammation in TLR5-Deficient Mice

Cell host & microbe, 2012-08, Vol.12 (2), p.139-152

2012

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Optimized ancestral state reconstruction using Sankoff parsimony

BMC bioinformatics, 2009-02, Vol.10 (1), p.51-51, Article 51

2009

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Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice

Science (American Association for the Advancement of Science), 2013-09, Vol.341 (6150), p.1079-1079

2013

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The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

Gigascience, 2012-07, Vol.1 (1), p.7-7, Article 7

2012

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Experimental and analytical tools for studying the human microbiome

Intestinal Microbiota Is Influenced by Gender and Body Mass Index

Consumption of Two Healthy Dietary Patterns Restored Microbiota Dysbiosis in Obese Patients with Metabolic Dysfunction

Anal gas evacuation and colonic microbiota in patients with flatulence: effect of diet

Translating microbiome futures

Flexible taxonomic assignment of ambiguous sequencing reads

The Impact of the Gut Microbiota on Human Health: An Integrative View

The role of the gut microbiome in systemic inflammatory disease

The microbiome in early life: implications for health outcomes

UCHIME improves sensitivity and speed of chimera detection

Early-life gut microbiome composition and milk allergy resolution

Phylogenetic reconstruction from non-genomic data

The Long-Term Stability of the Human Gut Microbiota

Interactions Between Diet and the Intestinal Microbiota Alter Intestinal Permeability and Colitis Severity in Mice

Gut microbiome of mothers delivering prematurely shows reduced diversity and lower relative abundance of Bifidobacterium and Streptococcus

Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer

The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States

Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities

Transient Inability to Manage Proteobacteria Promotes Chronic Gut Inflammation in TLR5-Deficient Mice

Optimized ancestral state reconstruction using Sankoff parsimony

Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

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