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Rapid and precise alignment of raw reads against redundant databases with KMA

BMC bioinformatics, 2018-08, Vol.19 (1), p.307-307, Article 307

2018

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CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data

Genome Biology, 2020-04, Vol.21 (1), p.103-15, Article 103

2020

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Scaling neighbor joining to one million taxa with dynamic and heuristic neighbor joining

Bioinformatics (Oxford, England), 2023-01, Vol.39 (1)

2023

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Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data

Journal of antimicrobial chemotherapy, 2016-09, Vol.71 (9), p.2484-2488

2016

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Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering

Scientific reports, 2020-02, Vol.10 (1), p.3033-3033, Article 3033

2020

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LRE-Finder, a Web tool for detection of the 23S rRNA mutations and the optrA, cfr, cfr(B) and poxtA genes encoding linezolid resistance in enterococci from whole-genome sequences

Journal of antimicrobial chemotherapy, 2019-06, Vol.74 (6), p.1473-1476

2019

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ARGprofiler—a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets

Bioinformatics (Oxford, England), 2024-03, Vol.40 (3)

2024

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SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies

Microbiology spectrum, 2022-12, Vol.10 (6), p.e0264122-e0264122

2022

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The remarkable convergence of skull shape in crocodilians and toothed whales

Proceedings of the Royal Society. B, Biological sciences, 2017-03, Vol.284 (1850), p.20162348-20162348

Royal Society (Great Britain), 2017

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An investigation of the impact of wind speed and turbulence on small wind turbine operation and fatigue loads

Renewable energy, 2020-02, Vol.146, p.87-98

2020

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Automated download and clean-up of family-specific databases for kmer-based virus identification

Bioinformatics, 2021-05, Vol.37 (5), p.705-710

2021

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Improved Resistance Prediction in Mycobacterium tuberculosis by Better Handling of Insertions and Deletions, Premature Stop Codons, and Filtering of Non-informative Sites

Frontiers in microbiology, 2019-10, Vol.10, p.2464-2464

2019

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Supermodeled sabercat, predatory behavior in Smilodon fatalis revealed by high-resolution 3D computer simulation

Proceedings of the National Academy of Sciences - PNAS, 2007-10, Vol.104 (41), p.16010-16015

2007

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MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads

Biology methods and protocols, 2021, Vol.6 (1), p.bpab008-bpab008

2021

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Computer simulation of feeding behaviour in the thylacine and dingo as a novel test for convergence and niche overlap

Proceedings of the Royal Society. B, Biological sciences, 2007-11, Vol.274 (1627), p.2819-2828

2007

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Nanopore sequencing technology for clinical diagnosis of infectious diseases where laboratory capacity is meager: A case report

Heliyon, 2023-07, Vol.9 (7), p.e17439, Article e17439

2023

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Finite element analysis of three patterns of internal fixation of fractures of the mandibular condyle

British journal of oral & maxillofacial surgery, 2013-06, Vol.51 (4), p.326-331

2013

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ResFinder - an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes

Microbial genomics, 2022-01, Vol.8 (1)

2022

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Large orb-webs adapted to maximise total biomass not rare, large prey

Scientific reports, 2015-09, Vol.5 (1), p.14121-14121, Article 14121

2015

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Effects of gape and tooth position on bite force and skull stress in the dingo (Canis lupus dingo) using a 3-dimensional finite element approach

PloS one, 2008-05, Vol.3 (5), p.e2200

2008

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Comparative Biomechanical Modeling of Metatherian and Placental Saber-Tooths: A Different Kind of Bite for an Extreme Pouched Predator

PloS one, 2013-06, Vol.8 (6), p.e66888-e66888

2013

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Metagenomic DNA sequencing for semi-quantitative pathogen detection from urine: a prospective, laboratory-based, proof-of-concept study

The Lancet. Microbe, 2022-08, Vol.3 (8), p.e588-e597

2022

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An empirical model for fatigue behavior prediction of glass fibre-reinforced plastic composites for various stress ratios and test frequencies

Composites. Part A, Applied science and manufacturing, 2003-01, Vol.34 (4), p.313-326

2003

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The European livestock resistome

mSystems, 2024-04, Vol.9 (4), p.e0132823-e0132823

2024

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High‐Resolution Three‐Dimensional Computer Simulation of Hominid Cranial Mechanics

Anatomical record (Hoboken, N.J. : 2007), 2007-10, Vol.290 (10), p.1248-1255

2007

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Rapid and precise alignment of raw reads against redundant databases with KMA

CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data

Scaling neighbor joining to one million taxa with dynamic and heuristic neighbor joining

Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data

Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering

LRE-Finder, a Web tool for detection of the 23S rRNA mutations and the optrA, cfr, cfr(B) and poxtA genes encoding linezolid resistance in enterococci from whole-genome sequences

ARGprofiler—a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets

SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies

The remarkable convergence of skull shape in crocodilians and toothed whales

An investigation of the impact of wind speed and turbulence on small wind turbine operation and fatigue loads

Automated download and clean-up of family-specific databases for kmer-based virus identification

Improved Resistance Prediction in Mycobacterium tuberculosis by Better Handling of Insertions and Deletions, Premature Stop Codons, and Filtering of Non-informative Sites

Supermodeled sabercat, predatory behavior in Smilodon fatalis revealed by high-resolution 3D computer simulation

MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads

Computer simulation of feeding behaviour in the thylacine and dingo as a novel test for convergence and niche overlap

Nanopore sequencing technology for clinical diagnosis of infectious diseases where laboratory capacity is meager: A case report

Finite element analysis of three patterns of internal fixation of fractures of the mandibular condyle

ResFinder - an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes

Large orb-webs adapted to maximise total biomass not rare, large prey

Effects of gape and tooth position on bite force and skull stress in the dingo (Canis lupus dingo) using a 3-dimensional finite element approach

Comparative Biomechanical Modeling of Metatherian and Placental Saber-Tooths: A Different Kind of Bite for an Extreme Pouched Predator

Metagenomic DNA sequencing for semi-quantitative pathogen detection from urine: a prospective, laboratory-based, proof-of-concept study

An empirical model for fatigue behavior prediction of glass fibre-reinforced plastic composites for various stress ratios and test frequencies

The European livestock resistome

High‐Resolution Three‐Dimensional Computer Simulation of Hominid Cranial Mechanics

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