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Information-theoretic evaluation of predicted ontological annotations

Bioinformatics, 2013-07, Vol.29 (13), p.i53-i61

2013

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Analysis of protein function and its prediction from amino acid sequence

Proteins, structure, function, and bioinformatics, 2011-07, Vol.79 (7), p.2086-2096

2011

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Testing the ortholog conjecture with comparative functional genomic data from mammals

PLoS computational biology, 2011-06, Vol.7 (6), p.e1002073-e1002073

2011

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Utilizing ExAC to assess the hidden contribution of variants of unknown significance to Sanfilippo Type B incidence

PloS one, 2018-07, Vol.13 (7), p.e0200008-e0200008

2018

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Predicting disease severity in metachromatic leukodystrophy using protein activity and a patient phenotype matrix

Genome Biology, 2023-07, Vol.24 (1), p.172-172, Article 172

2023

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The impact of incomplete knowledge on the evaluation of protein function prediction: a structured-output learning perspective

Bioinformatics, 2014-09, Vol.30 (17), p.i609-i616

2014

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Identifying therapeutic drug targets using bidirectional effect genes

Nature communications, 2021-04, Vol.12 (1), p.2224-2224, Article 2224

2021

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An integrated approach to inferring gene-disease associations in humans

Proteins, structure, function, and bioinformatics, 2008-08, Vol.72 (3), p.1030-1037

2008

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Comparative analysis of pseudogenes across three phyla

Proceedings of the National Academy of Sciences - PNAS, 2014-09, Vol.111 (37), p.13361-13366

2014

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Vector Quantization Kernels for the Classification of Protein Sequences and Structures

Pacific Symposium on Biocomputing 2014, 2014, p.316-327

2014

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Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms

Nature communications, 2015-06, Vol.6 (1), p.7256-7256, Article 7256

2015

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The longitudinal kinetics of AAV5 vector integration profiles and evaluation of clonal expansion in mice

Molecular therapy. Methods & clinical development, 2024-09, Vol.32 (3), p.101294, Article 101294

2024

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Characterization of glycan substrates accumulating in GM1 Gangliosidosis

Molecular genetics and metabolism reports, 2019-12, Vol.21, p.100524-100524, Article 100524

2019

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Prediction of functional regulatory SNPs in monogenic and complex disease

Human mutation, 2011-10, Vol.32 (10), p.1183-1190

2011

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Information-Theoretic Evaluation for Computational Biomedical Ontologies

Clark, Wyatt Travis

2014., 2014

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From protein-disease associations to disease informatics

Frontiers in bioscience, 2008-05, Vol.13 (13), p.3391

2008

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Development of physiologically relevant synthetic thrombus for use in visual analysis of in vitro mechanical thrombectomy device testing

Journal of neurointerventional surgery, 2024-07, p.jnis-2024-021743

2024

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Utilizing activity assays and population-wide allele frequencies to assess the contribution of novel mutations in NAGLU to MPS IIIB incidence

Molecular genetics and metabolism, 2016-02, Vol.117 (2), p.S72-S72

2016

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Erratum: Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms

Nature communications, 2015-09, Vol.6 (1), p.8389-8389, Article 8389

2015

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Testing the Ortholog Conjecture with Comparative Functional Genomic Data from Mammals: e1002073

PLoS computational biology, 2011-06, Vol.7 (6)

2011

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Experiments and Results

Information-Theoretic Evaluation for Computational Biomedical Ontologies, 2014, p.29-41

Clark, Wyatt Travis

2014

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Predicting Protein-Disease Relationships Using Sequence, Physicochemical Properties, and Molecular Function Information

Nature precedings, 2008-08

2008

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Understanding protein function through statistical inference and evolutionary analysis

Clark, Wyatt Travis

2013

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Discussion

Information-Theoretic Evaluation for Computational Biomedical Ontologies, 2014, p.43-44

Clark, Wyatt Travis

2014

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Information-theoretic evaluation of predicted ontological annotations

Analysis of protein function and its prediction from amino acid sequence

Testing the ortholog conjecture with comparative functional genomic data from mammals

Utilizing ExAC to assess the hidden contribution of variants of unknown significance to Sanfilippo Type B incidence

Predicting disease severity in metachromatic leukodystrophy using protein activity and a patient phenotype matrix

The impact of incomplete knowledge on the evaluation of protein function prediction: a structured-output learning perspective

Identifying therapeutic drug targets using bidirectional effect genes

An integrated approach to inferring gene-disease associations in humans

Comparative analysis of pseudogenes across three phyla

Vector Quantization Kernels for the Classification of Protein Sequences and Structures

Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms

The longitudinal kinetics of AAV5 vector integration profiles and evaluation of clonal expansion in mice

Assessment of predicted enzymatic activity of α‐N‐acetylglucosaminidase variants of unknown significance for CAGI 2016

Characterization of glycan substrates accumulating in GM1 Gangliosidosis

Prediction of functional regulatory SNPs in monogenic and complex disease

Information-Theoretic Evaluation for Computational Biomedical Ontologies

From protein-disease associations to disease informatics

Development of physiologically relevant synthetic thrombus for use in visual analysis of in vitro mechanical thrombectomy device testing

Utilizing activity assays and population-wide allele frequencies to assess the contribution of novel mutations in NAGLU to MPS IIIB incidence

Erratum: Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms

Testing the Ortholog Conjecture with Comparative Functional Genomic Data from Mammals: e1002073

Experiments and Results

Predicting Protein-Disease Relationships Using Sequence, Physicochemical Properties, and Molecular Function Information

Understanding protein function through statistical inference and evolutionary analysis

Discussion

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