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The code and beyond: transcription regulation by the RNA polymerase II carboxy-terminal domain

Nature reviews. Molecular cell biology, 2017-04, Vol.18 (4), p.263

2017

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Nascent transcript sequencing visualizes transcription at nucleotide resolution

Nature (London), 2011-01, Vol.469 (7330), p.368-373

2011

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Splicing Kinetics and Coordination Revealed by Direct Nascent RNA Sequencing through Nanopores

Molecular cell, 2020-03, Vol.77 (5), p.985-998.e8

2020

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Optimized localization analysis for single-molecule tracking and super-resolution microscopy

Nature methods, 2010-05, Vol.7 (5), p.377

2010

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Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution

Cell, 2015-04, Vol.161 (3), p.541-554

2015

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Synchronized mitochondrial and cytosolic translation programs

Nature (London), 2016-05, Vol.533 (7604), p.499-503

2016

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Single mammalian cells compensate for differences in cellular volume and DNA copy number through independent global transcriptional mechanisms

Molecular cell, 2015-04, Vol.58 (2), p.339-352

2015

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Pause & go: from the discovery of RNA polymerase pausing to its functional implications

Current opinion in cell biology, 2017-06, Vol.46, p.72-80

2017

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Single-molecule regulatory architectures captured by chromatin fiber sequencing

Science (American Association for the Advancement of Science), 2020-06, Vol.368 (6498), p.1449-1454

2020

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A Chromatin-Based Mechanism for Limiting Divergent Noncoding Transcription

Cell, 2014-06, Vol.157 (7), p.1712-1723

2014

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The Ground State and Evolution of Promoter Region Directionality

Cell, 2017-08, Vol.170 (5), p.889-898.e10

2017

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Proteotoxicity from aberrant ribosome biogenesis compromises cell fitness

eLife, 2019-03, Vol.8

2019

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Comprehensive RNA Polymerase II Interactomes Reveal Distinct and Varied Roles for Each Phospho-CTD Residue

Cell reports (Cambridge), 2016-06, Vol.15 (10), p.2147-2158

2016

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Essential histone chaperones collaborate to regulate transcription and chromatin integrity

Genes & development, 2021-05, Vol.35 (9-10), p.698-712

2021

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The yeast exoribonuclease Xrn1 and associated factors modulate RNA polymerase II processivity in 5‘ and 3‘ gene regions

The Journal of biological chemistry, 2020-08, Vol.295 (33), p.11435-11454

2020

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GeneWalk identifies relevant gene functions for a biological context using network representation learning

Genome Biology, 2021-02, Vol.22 (1), p.55-55, Article 55

2021

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The Multiple Levels of Mitonuclear Coregulation

Annual review of genetics, 2018-11, Vol.52, p.511

2018

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Spt6 Is Required for the Fidelity of Promoter Selection

Molecular cell, 2018-11, Vol.72 (4), p.687-699.e6

2018

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Revealing nascent RNA processing dynamics with nano-COP

Nature protocols, 2021-03, Vol.16 (3), p.1343-1375

2021

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Balanced mitochondrial and cytosolic translatomes underlie the biogenesis of human respiratory complexes

Genome Biology, 2022-08, Vol.23 (1), p.170-170, Article 170

2022

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Subgenic Pol II interactomes identify region‐specific transcription elongation regulators

Molecular systems biology, 2017-01, Vol.13 (1), p.900-n/a

2017

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Transcription elongation is finely tuned by dozens of regulatory factors

eLife, 2022-05, Vol.11

2022

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Post-transcriptional splicing can occur in a slow-moving zone around the gene

eLife, 2024-04, Vol.12

2024

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Single Molecule High-Resolution Colocalization of Cy3 and Cy5 Attached to Macromolecules Measures Intramolecular Distances through Time

Proceedings of the National Academy of Sciences - PNAS, 2005-02, Vol.102 (5), p.1419-1423

2005

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The code and beyond: transcription regulation by the RNA polymerase II carboxy-terminal domain

Nascent transcript sequencing visualizes transcription at nucleotide resolution

Splicing Kinetics and Coordination Revealed by Direct Nascent RNA Sequencing through Nanopores

Optimized localization analysis for single-molecule tracking and super-resolution microscopy

Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution

Synchronized mitochondrial and cytosolic translation programs

Single mammalian cells compensate for differences in cellular volume and DNA copy number through independent global transcriptional mechanisms

Pause & go: from the discovery of RNA polymerase pausing to its functional implications

Single-molecule regulatory architectures captured by chromatin fiber sequencing

A Chromatin-Based Mechanism for Limiting Divergent Noncoding Transcription

The Ground State and Evolution of Promoter Region Directionality

Proteotoxicity from aberrant ribosome biogenesis compromises cell fitness

BET Bromodomain Proteins Function as Master Transcription Elongation Factors Independent of CDK9 Recruitment

Comprehensive RNA Polymerase II Interactomes Reveal Distinct and Varied Roles for Each Phospho-CTD Residue

Essential histone chaperones collaborate to regulate transcription and chromatin integrity

The yeast exoribonuclease Xrn1 and associated factors modulate RNA polymerase II processivity in 5‘ and 3‘ gene regions

GeneWalk identifies relevant gene functions for a biological context using network representation learning

The Multiple Levels of Mitonuclear Coregulation

Spt6 Is Required for the Fidelity of Promoter Selection

Revealing nascent RNA processing dynamics with nano-COP

Balanced mitochondrial and cytosolic translatomes underlie the biogenesis of human respiratory complexes

Subgenic Pol II interactomes identify region‐specific transcription elongation regulators

Transcription elongation is finely tuned by dozens of regulatory factors

Post-transcriptional splicing can occur in a slow-moving zone around the gene

Single Molecule High-Resolution Colocalization of Cy3 and Cy5 Attached to Macromolecules Measures Intramolecular Distances through Time

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