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Microbial community analysis using high-throughput sequencing technology: a beginner’s guide for microbiologists

The Journal of Microbiology, 2020, 58(3), , pp.176-192

2020

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COVID-19 Patients Upregulate Toll-like Receptor 4-mediated Inflammatory Signaling That Mimics Bacterial Sepsis

Journal of Korean Medical Science, 2020, 35(38), , pp.1-17

2020

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Comparability of reference-based and reference-free transcriptome analysis approaches at the gene expression level

BMC bioinformatics, 2021-10, Vol.22 (Suppl 11), p.1-310, Article 310

2021

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A machine learning model for classifying G-protein-coupled receptors as agonists or antagonists

BMC bioinformatics, 2022-08, Vol.23 (Suppl 6), p.1-346, Article 346

2022

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PIC-Me: paralogs and isoforms classifier based on machine-learning approaches

BMC bioinformatics, 2021-10, Vol.22 (Suppl 11), p.1-311, Article 311

2021

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High expression hampers horizontal gene transfer

Genome biology and evolution, 2012-01, Vol.4 (4), p.523-532

2012

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Differential requirements for mRNA folding partially explain why highly expressed proteins evolve slowly

Proceedings of the National Academy of Sciences - PNAS, 2013-02, Vol.110 (8), p.E678-E686

2013

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In silico re-identification of properties of drug target proteins

BMC bioinformatics, 2017-05, Vol.18 (Suppl 7), p.248-248, Article 248

2017

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The KRAB zinc finger protein ZFP809 is required to initiate epigenetic silencing of endogenous retroviruses

Genes & development, 2015-03, Vol.29 (5), p.538-554

2015

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Conventionally used reference genes are not outstanding for normalization of gene expression in human cancer research

BMC bioinformatics, 2019-05, Vol.20 (Suppl 10), p.245-245, Article 245

2019

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Peroxiredoxin 5 regulates osteogenic differentiation through interaction with hnRNPK during bone regeneration

eLife, 2023-02, Vol.12

2023

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Quantification of the paralytic shellfish poisoning dinoflagellate Alexandrium species using a digital PCR

Harmful algae, 2020-02, Vol.92, p.101726-101726, Article 101726

2020

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Histone and RNA-binding protein interaction creates crosstalk network for regulation of alternative splicing

Biochemical and biophysical research communications, 2018-04, Vol.499 (1), p.30-36

2018

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Identification of Novel Genes for Cell Fusion during Osteoclast Formation

International journal of molecular sciences, 2022-06, Vol.23 (12), p.6421

2022

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Effects of Mitochondrial Transplantation on Transcriptomics in a Polymicrobial Sepsis Model

International journal of molecular sciences, 2023-10, Vol.24 (20), p.15326

2023

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Intra and Interspecific Variations of Gene Expression Levels in Yeast Are Largely Neutral: (Nei Lecture, SMBE 2016, Gold Coast)

Molecular biology and evolution, 2017-09, Vol.34 (9), p.2125-2139

2017

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Dysregulated thrombospondin 1 and miRNA-29a-3p in severe COVID-19

Scientific reports, 2022-12, Vol.12 (1), p.21227-21227, Article 21227

2022

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Transcriptome profiling analysis of senescent gingival fibroblasts in response to Fusobacterium nucleatum infection

PloS one, 2017-11, Vol.12 (11), p.e0188755-e0188755

2017

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Functional Diversification of Motor Neuron-specific Isl1 Enhancers during Evolution

PLoS genetics, 2015-10, Vol.11 (10), p.e1005560-e1005560

2015

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An in vitro technique to identify the RNA binding-site sequences for RNA-binding proteins

BioTechniques, 2017-07, Vol.63 (1), p.28-33

2017

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The bipartite mitochondrial genome of Ruizia karukerae (Rhigonematomorpha, Nematoda)

Scientific reports, 2018-05, Vol.8 (1), p.7482-8, Article 7482

2018

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ppGpp signaling plays a critical role in virulence of Acinetobacter baumannii

Virulence, 2021-12, Vol.12 (1), p.2122-2132

2021

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MiR-144-3p is associated with pathological inflammation in patients infected with Mycobacteroides abscessus

Experimental and Molecular Medicine, 2021, 53(0), , pp.1-14

2021

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Phylogeography of the Rock Shell Thais clavigera (Mollusca): Evidence for Long-Distance Dispersal in the Northwestern Pacific

PloS one, 2015-07, Vol.10 (7), p.e0129715-e0129715

2015

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In silico prediction of potential chemical reactions mediated by human enzymes

BMC bioinformatics, 2018-06, Vol.19 (Suppl 8), p.207-207, Article 207

2018

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Microbial community analysis using high-throughput sequencing technology: a beginner’s guide for microbiologists

COVID-19 Patients Upregulate Toll-like Receptor 4-mediated Inflammatory Signaling That Mimics Bacterial Sepsis

Comparability of reference-based and reference-free transcriptome analysis approaches at the gene expression level

A machine learning model for classifying G-protein-coupled receptors as agonists or antagonists

PIC-Me: paralogs and isoforms classifier based on machine-learning approaches

High expression hampers horizontal gene transfer

Differential requirements for mRNA folding partially explain why highly expressed proteins evolve slowly

In silico re-identification of properties of drug target proteins

The KRAB zinc finger protein ZFP809 is required to initiate epigenetic silencing of endogenous retroviruses

Conventionally used reference genes are not outstanding for normalization of gene expression in human cancer research

Peroxiredoxin 5 regulates osteogenic differentiation through interaction with hnRNPK during bone regeneration

Quantification of the paralytic shellfish poisoning dinoflagellate Alexandrium species using a digital PCR

Histone and RNA-binding protein interaction creates crosstalk network for regulation of alternative splicing

Identification of Novel Genes for Cell Fusion during Osteoclast Formation

Effects of Mitochondrial Transplantation on Transcriptomics in a Polymicrobial Sepsis Model

Intra and Interspecific Variations of Gene Expression Levels in Yeast Are Largely Neutral: (Nei Lecture, SMBE 2016, Gold Coast)

Dysregulated thrombospondin 1 and miRNA-29a-3p in severe COVID-19

Transcriptome profiling analysis of senescent gingival fibroblasts in response to Fusobacterium nucleatum infection

Functional Diversification of Motor Neuron-specific Isl1 Enhancers during Evolution

An in vitro technique to identify the RNA binding-site sequences for RNA-binding proteins

The bipartite mitochondrial genome of Ruizia karukerae (Rhigonematomorpha, Nematoda)

ppGpp signaling plays a critical role in virulence of Acinetobacter baumannii

MiR-144-3p is associated with pathological inflammation in patients infected with Mycobacteroides abscessus

Phylogeography of the Rock Shell Thais clavigera (Mollusca): Evidence for Long-Distance Dispersal in the Northwestern Pacific

In silico prediction of potential chemical reactions mediated by human enzymes

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