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Cooperative Binding of Transcription Factors Orchestrates Reprogramming

Cell, 2017-01, Vol.168 (3), p.442-459.e20

2017

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A protein assembly mediates Xist localization and gene silencing

Nature (London), 2020-11, Vol.587 (7832), p.145-151

2020

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Long-Range Chromatin Contacts in Embryonic Stem Cells Reveal a Role for Pluripotency Factors and Polycomb Proteins in Genome Organization

Cell stem cell, 2013-11, Vol.13 (5), p.602-616

2013

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Human Naive Pluripotent Stem Cells Model X Chromosome Dampening and X Inactivation

Cell stem cell, 2017-01, Vol.20 (1), p.87-101

2017

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Promoter-Enhancer Communication Occurs Primarily within Insulated Neighborhoods

Molecular cell, 2019-01, Vol.73 (2), p.250-263.e5

2019

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DNA methylation estimation using methylation-sensitive restriction enzyme bisulfite sequencing (MREBS)

PloS one, 2019-04, Vol.14 (4), p.e0214368-e0214368

2019

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Mot1, Ino80C, and NC2 Function Coordinately to Regulate Pervasive Transcription in Yeast and Mammals

Molecular cell, 2017-08, Vol.67 (4), p.594-607.e4

2017

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Comparison of reprogramming factor targets reveals both species-specific and conserved mechanisms in early iPSC reprogramming

BMC genomics, 2018-12, Vol.19 (1), p.956-956, Article 956

2018

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X Chromosome Dosage Influences DNA Methylation Dynamics during Reprogramming to Mouse iPSCs

Stem cell reports, 2018-05, Vol.10 (5), p.1537-1550

2018

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A One-step strategy to target essential factors with auxin-inducible degron system in mouse embryonic stem cells

Frontiers in cell and developmental biology, 2022-08, Vol.10, p.964119-964119

2022

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A functional assay for microRNA target identification and validation

Nucleic acids research, 2012-05, Vol.40 (10), p.e75

2012

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Hexokinase 2-mediated gene expression via histone lactylation is required for hepatic stellate cell activation and liver fibrosis

Cell metabolism, 2023-08, Vol.35 (8), p.1406-1423.e8

2023

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Unsupervised learning from topological data analysis to identify cellular states from single-cell RNA-seq analysis

Biophysical journal, 2023-02, Vol.122 (3), p.360a-360a

2023

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Mechanistic insights into reprogramming to induced pluripotency

Journal of cellular physiology, 2011-04, Vol.226 (4), p.868-878

2011

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Proteomic and genomic approaches reveal critical functions of H3K9 methylation and heterochromatin protein-1γ in reprogramming to pluripotency

Nature cell biology, 2013-07, Vol.15 (7), p.872

2013

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Reprogramming cell fates towards novel cancer immunotherapies

Current opinion in pharmacology, 2022-12, Vol.67, p.102312-102312, Article 102312

2022

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Human Embryonic Stem Cells Do Not Change Their X Inactivation Status during Differentiation

Cell reports (Cambridge), 2017-01, Vol.18 (1), p.54-67

2017

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XIST directly regulates X-linked and autosomal genes in naive human pluripotent cells

Cell, 2024-01, Vol.187 (1), p.110-129.e31

2024

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The BAF and PRC2 Complex Subunits Dpf2 and Eed Antagonistically Converge on Tbx3 to Control ESC Differentiation

Cell stem cell, 2019-01, Vol.24 (1), p.138-152.e8

2019

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Publisher Correction: A protein assembly mediates Xist localization and gene silencing

Nature (London), 2020-10, Vol.586 (7830), p.E30-E30

2020

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Proteomic and protein interaction network analysis of human T lymphocytes during cell‐cycle entry

Molecular systems biology, 2012-03, Vol.8 (1), p.573-n/a

2012

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Epigenetics of human T cells during the G0-->G1 transition

Genome Research, 2009-08, Vol.19 (8), p.1325-1337

2009

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Identifying Transient Cells During Reprogramming via Persistent Homology

2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), 2022, Vol.2022, p.2920-2923

2022

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The ΔN Isoform of the p73 Gene Is Induced during the G0→G1 Transition in Primary Human T Cells

Blood, 2007-11, Vol.110 (11), p.3353-3353

2007

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Systems Biology Analysis of Human Primary T Cells Identifies SAP145 as Rate Limiting for the G1→S Phase Transition

Blood, 2007-11, Vol.110 (11), p.3350-3350

2007

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Cooperative Binding of Transcription Factors Orchestrates Reprogramming

A protein assembly mediates Xist localization and gene silencing

Long-Range Chromatin Contacts in Embryonic Stem Cells Reveal a Role for Pluripotency Factors and Polycomb Proteins in Genome Organization

Human Naive Pluripotent Stem Cells Model X Chromosome Dampening and X Inactivation

Promoter-Enhancer Communication Occurs Primarily within Insulated Neighborhoods

DNA methylation estimation using methylation-sensitive restriction enzyme bisulfite sequencing (MREBS)

Mot1, Ino80C, and NC2 Function Coordinately to Regulate Pervasive Transcription in Yeast and Mammals

Comparison of reprogramming factor targets reveals both species-specific and conserved mechanisms in early iPSC reprogramming

X Chromosome Dosage Influences DNA Methylation Dynamics during Reprogramming to Mouse iPSCs

A One-step strategy to target essential factors with auxin-inducible degron system in mouse embryonic stem cells

A functional assay for microRNA target identification and validation

Hexokinase 2-mediated gene expression via histone lactylation is required for hepatic stellate cell activation and liver fibrosis

Unsupervised learning from topological data analysis to identify cellular states from single-cell RNA-seq analysis

Mechanistic insights into reprogramming to induced pluripotency

Proteomic and genomic approaches reveal critical functions of H3K9 methylation and heterochromatin protein-1γ in reprogramming to pluripotency

Reprogramming cell fates towards novel cancer immunotherapies

Human Embryonic Stem Cells Do Not Change Their X Inactivation Status during Differentiation

XIST directly regulates X-linked and autosomal genes in naive human pluripotent cells

The BAF and PRC2 Complex Subunits Dpf2 and Eed Antagonistically Converge on Tbx3 to Control ESC Differentiation

Publisher Correction: A protein assembly mediates Xist localization and gene silencing

Proteomic and protein interaction network analysis of human T lymphocytes during cell‐cycle entry

Epigenetics of human T cells during the G0-->G1 transition

Identifying Transient Cells During Reprogramming via Persistent Homology

The ΔN Isoform of the p73 Gene Is Induced during the G0→G1 Transition in Primary Human T Cells

Systems Biology Analysis of Human Primary T Cells Identifies SAP145 as Rate Limiting for the G1→S Phase Transition

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