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Adaptive laboratory evolution of a genome-reduced Escherichia coli

Nature communications, 2019-02, Vol.10 (1), p.935-935, Article 935

2019

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RiboRid: A low cost, advanced, and ultra-efficient method to remove ribosomal RNA for bacterial transcriptomics

PLoS genetics, 2021-09, Vol.17 (9), p.e1009821-e1009821

2021

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Synthetic Biology Approaches in The Development of Engineered Therapeutic Microbes

International journal of molecular sciences, 2020-11, Vol.21 (22), p.8744

2020

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STATR: A simple analysis pipeline of Ribo-Seq in bacteria

The Journal of Microbiology, 2020, 58(3), , pp.217-226

2020

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Engineering Biology to Construct Microbial Chassis for the Production of Difficult-to-Express Proteins

International journal of molecular sciences, 2020-02, Vol.21 (3), p.990

2020

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Advancing the scale of synthetic biology via cross-species transfer of cellular functions enabled by iModulon engraftment

Nature communications, 2024-03, Vol.15 (1), p.2356-2356, Article 2356

2024

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Peptide Transporter CstA Imports Pyruvate in Escherichia coli K-12

Journal of bacteriology, 2018-04, Vol.200 (7), p.e00771-17

2018

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Adaptive laboratory evolution of Escherichia coli W enhances gamma-aminobutyric acid production using glycerol as the carbon source

Metabolic engineering, 2022-01, Vol.69, p.59-72

2022

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Minimal genome: Worthwhile or worthless efforts toward being smaller?

Biotechnology journal, 2016-02, Vol.11 (2), p.199-211

2016

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Inactivation of a Mismatch-Repair System Diversifies Genotypic Landscape of Escherichia coli During Adaptive Laboratory Evolution

Frontiers in microbiology, 2019-08, Vol.10, p.1845-1845

2019

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Ageing and rejuvenation models reveal changes in key microbial communities associated with healthy ageing

Microbiome, 2021-12, Vol.9 (1), p.240-240, Article 240

2021

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Revealing Causes for False-Positive and False-Negative Calling of Gene Essentiality in Escherichia coli Using Transposon Insertion Sequencing

mSystems, 2023-02, Vol.8 (1), p.e0089622

2023

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Mini review: Enzyme-based DNA synthesis and selective retrieval for data storage

Computational and structural biotechnology journal, 2021-01, Vol.19, p.2468-2476

2021

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Comprehensive 16S rRNA and metagenomic data from the gut microbiome of aging and rejuvenation mouse models

Scientific data, 2022-05, Vol.9 (1), p.197-7, Article 197

2022

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Elucidating the Regulatory Elements for Transcription Termination and Posttranscriptional Processing in the Streptomyces clavuligerus Genome

mSystems, 2021-05, Vol.6 (3)

2021

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System-Level Analysis of Transcriptional and Translational Regulatory Elements in Streptomyces griseus

Frontiers in bioengineering and biotechnology, 2022-02, Vol.10, p.844200

2022

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Reconstruction of Acetogenesis Pathway Using Short-Read Sequencing of Clostridium aceticum Genome

Journal of nanoscience and nanotechnology, 2015-05, Vol.15 (5), p.3852-3861

2015

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High-Level dCas9 Expression Induces Abnormal Cell Morphology in Escherichia coli

ACS synthetic biology, 2018-04, Vol.7 (4), p.1085-1094

2018

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Reduction-to-synthesis: the dominant approach to genome-scale synthetic biology

Trends in biotechnology (Regular ed.), 2024-08, Vol.42 (8), p.1048-1063

2024

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Synthetic 3'-UTR valves for optimal metabolic flux control in Escherichia coli

Nucleic acids research, 2022-04, Vol.50 (7), p.4171-4186

2022

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Engineering Bacteroides thetaiotaomicron to produce non-native butyrate based on a genome-scale metabolic model-guided design

Metabolic engineering, 2021-11, Vol.68, p.174-186

2021

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Serial adaptive laboratory evolution enhances mixed carbon metabolic capacity of Escherichia coli

Metabolic engineering, 2024-05, Vol.83, p.160-171

2024

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Machine-Learning Analysis of Streptomyces coelicolor Transcriptomes Reveals a Transcription Regulatory Network Encompassing Biosynthetic Gene Clusters

Advanced science, 2024-09, p.e2403912

2024

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A multifaceted cellular damage repair and prevention pathway promotes high‐level tolerance to β‐lactam antibiotics

EMBO reports, 2021-02, Vol.22 (2), p.e51790-n/a

2021

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Genome-scale analysis of Methicillin-resistant Staphylococcus aureus USA300 reveals a tradeoff between pathogenesis and drug resistance

Scientific reports, 2018-02, Vol.8 (1), p.2215-13, Article 2215

2018

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Adaptive laboratory evolution of a genome-reduced Escherichia coli

RiboRid: A low cost, advanced, and ultra-efficient method to remove ribosomal RNA for bacterial transcriptomics

Synthetic Biology Approaches in The Development of Engineered Therapeutic Microbes

STATR: A simple analysis pipeline of Ribo-Seq in bacteria

Engineering Biology to Construct Microbial Chassis for the Production of Difficult-to-Express Proteins

Advancing the scale of synthetic biology via cross-species transfer of cellular functions enabled by iModulon engraftment

Peptide Transporter CstA Imports Pyruvate in Escherichia coli K-12

Adaptive laboratory evolution of Escherichia coli W enhances gamma-aminobutyric acid production using glycerol as the carbon source

Minimal genome: Worthwhile or worthless efforts toward being smaller?

Inactivation of a Mismatch-Repair System Diversifies Genotypic Landscape of Escherichia coli During Adaptive Laboratory Evolution

Ageing and rejuvenation models reveal changes in key microbial communities associated with healthy ageing

Revealing Causes for False-Positive and False-Negative Calling of Gene Essentiality in Escherichia coli Using Transposon Insertion Sequencing

Mini review: Enzyme-based DNA synthesis and selective retrieval for data storage

Comprehensive 16S rRNA and metagenomic data from the gut microbiome of aging and rejuvenation mouse models

Elucidating the Regulatory Elements for Transcription Termination and Posttranscriptional Processing in the Streptomyces clavuligerus Genome

System-Level Analysis of Transcriptional and Translational Regulatory Elements in Streptomyces griseus

Reconstruction of Acetogenesis Pathway Using Short-Read Sequencing of Clostridium aceticum Genome

High-Level dCas9 Expression Induces Abnormal Cell Morphology in Escherichia coli

Reduction-to-synthesis: the dominant approach to genome-scale synthetic biology

Synthetic 3'-UTR valves for optimal metabolic flux control in Escherichia coli

Engineering Bacteroides thetaiotaomicron to produce non-native butyrate based on a genome-scale metabolic model-guided design

Serial adaptive laboratory evolution enhances mixed carbon metabolic capacity of Escherichia coli

Machine-Learning Analysis of Streptomyces coelicolor Transcriptomes Reveals a Transcription Regulatory Network Encompassing Biosynthetic Gene Clusters

A multifaceted cellular damage repair and prevention pathway promotes high‐level tolerance to β‐lactam antibiotics

Genome-scale analysis of Methicillin-resistant Staphylococcus aureus USA300 reveals a tradeoff between pathogenesis and drug resistance

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