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De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture

Proceedings of the National Academy of Sciences - PNAS, 2017-11, Vol.114 (46), p.12126-12131

2017

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Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy

Proceedings of the National Academy of Sciences - PNAS, 2012-10, Vol.109 (44), p.17800-17806

2012

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Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information

Proceedings of the National Academy of Sciences - PNAS, 2014-02, Vol.111 (5), p.1674-1674

2014

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Coevolutionary information, protein folding landscapes, and the thermodynamics of natural selection

Proceedings of the National Academy of Sciences - PNAS, 2014-08, Vol.111 (34), p.12408-12413

2014

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Uncovering the statistical physics of 3D chromosomal organization using data-driven modeling

Current opinion in structural biology, 2022-08, Vol.75, p.102418-102418, Article 102418

2022

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Residue coevolution and mutational landscape for OmpR and NarL response regulator subfamilies

Biophysical journal, 2024-03, Vol.123 (6), p.681-692

2024

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The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome

Nucleic acids research, 2021-01, Vol.49 (D1), p.D172-D182

2021

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Exploring chromosomal structural heterogeneity across multiple cell lines

eLife, 2020-10, Vol.9

2020

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Netrins and Netrin Receptors are Essential for Normal Targeting of Sensory Axons in the Zebrafish Olfactory Bulb

Neuroscience, 2023-01, Vol.508, p.19-29

2023

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Deciphering the structure of the condensin protein complex

Proceedings of the National Academy of Sciences - PNAS, 2018-11, Vol.115 (47), p.11911-11916

2018

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Metabolic reprogramming of skeletal muscle by resident macrophages points to CSF1R inhibitors as muscular dystrophy therapeutics

Science translational medicine, 2022-06, Vol.14 (651)

2022

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Exploring the role of internal friction in the dynamics of unfolded proteins using simple polymer models

The Journal of chemical physics, 2013-02, Vol.138 (7), p.074112-074112

2013

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Designing bacterial signaling interactions with coevolutionary landscapes

PloS one, 2018-08, Vol.13 (8), p.e0201734-e0201734

2018

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Expanding Direct Coupling Analysis to Identify Heterodimeric Interfaces from Limited Protein Sequence Data

The journal of physical chemistry. B, 2021-10, Vol.125 (41), p.11408-11417

2021

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Structural reorganization and relaxation dynamics of axially stressed chromosomes

Biophysical journal, 2023-05, Vol.122 (9), p.1633-1645

2023

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DPPIV + fibro-adipogenic progenitors form the niche of adult skeletal muscle self-renewing resident macrophages

Nature communications, 2023-12, Vol.14 (1), p.8273-8273, Article 8273

2023

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Loss of Neuropilin2a/b or Sema3fa alters olfactory sensory axon dynamics and protoglomerular targeting

Neural development, 2022-01, Vol.17 (1), p.1-1, Article 1

2022

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Structure-Based Model of RNA Pseudoknot Captures Magnesium-Dependent Folding Thermodynamics

The journal of physical chemistry. B, 2019-02, Vol.123 (7), p.1505-1511

2019

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A Combined Computational and Genetic Approach Uncovers Network Interactions of the Cyanobacterial Circadian Clock

Journal of bacteriology, 2016-09, Vol.198 (18), p.2439-2447

2016

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Correction to: Loss of Neuropilin2a/b or Sema3fa alters olfactory sensory axon dynamics and protoglomerular targeting

Neural development, 2022-03, Vol.17 (1), p.4-4, Article 4

2022

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A Mechanistic Study of Electron Transfer from the Distal Termini of Electrode-Bound, Single-Stranded DNAs

Journal of the American Chemical Society, 2010-11, Vol.132 (45), p.16120-16126

2010

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Cationic Cyclizations and Rearrangements Promoted by a Heterogeneous Gold Catalyst

Organic letters, 2014-02, Vol.16 (3), p.800-803

2014

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Olfactory sensory axons target specific protoglomeruli in the olfactory bulb of zebrafish

Neural development, 2017-10, Vol.12 (1), p.18-18, Article 18

2017

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Constructing sequence‐dependent protein models using coevolutionary information

Protein science, 2016-01, Vol.25 (1), p.111-122

2016

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De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture

Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy

Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information

Coevolutionary information, protein folding landscapes, and the thermodynamics of natural selection

Uncovering the statistical physics of 3D chromosomal organization using data-driven modeling

The Energetics and Physiological Impact of Cohesin Extrusion

Residue coevolution and mutational landscape for OmpR and NarL response regulator subfamilies

The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome

Exploring chromosomal structural heterogeneity across multiple cell lines

Netrins and Netrin Receptors are Essential for Normal Targeting of Sensory Axons in the Zebrafish Olfactory Bulb

Deciphering the structure of the condensin protein complex

Metabolic reprogramming of skeletal muscle by resident macrophages points to CSF1R inhibitors as muscular dystrophy therapeutics

Exploring the role of internal friction in the dynamics of unfolded proteins using simple polymer models

Designing bacterial signaling interactions with coevolutionary landscapes

Expanding Direct Coupling Analysis to Identify Heterodimeric Interfaces from Limited Protein Sequence Data

Structural reorganization and relaxation dynamics of axially stressed chromosomes

DPPIV + fibro-adipogenic progenitors form the niche of adult skeletal muscle self-renewing resident macrophages

Loss of Neuropilin2a/b or Sema3fa alters olfactory sensory axon dynamics and protoglomerular targeting

Structure-Based Model of RNA Pseudoknot Captures Magnesium-Dependent Folding Thermodynamics

A Combined Computational and Genetic Approach Uncovers Network Interactions of the Cyanobacterial Circadian Clock

Correction to: Loss of Neuropilin2a/b or Sema3fa alters olfactory sensory axon dynamics and protoglomerular targeting

A Mechanistic Study of Electron Transfer from the Distal Termini of Electrode-Bound, Single-Stranded DNAs

Cationic Cyclizations and Rearrangements Promoted by a Heterogeneous Gold Catalyst

Olfactory sensory axons target specific protoglomeruli in the olfactory bulb of zebrafish

Constructing sequence‐dependent protein models using coevolutionary information

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