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Multi-omics analysis identifies therapeutic vulnerabilities in triple-negative breast cancer subtypes

Nature communications, 2021-11, Vol.12 (1), p.6276-6276, Article 6276

2021

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Integration of Alzheimer’s disease genetics and myeloid genomics identifies disease risk regulatory elements and genes

Nature communications, 2021-03, Vol.12 (1), p.1610-1610, Article 1610

2021

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Ensemble methods of rank-based trees for single sample classification with gene expression profiles

Journal of translational medicine, 2024-02, Vol.22 (1), p.140-13, Article 140

2024

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Dynamic transcriptional activity and chromatin remodeling of regulatory T cells after varied duration of interleukin-2 receptor signaling

Nature immunology, 2022-05, Vol.23 (5), p.802-813

2022

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Neural mechanisms underlying the effects of physical fatigue on effort-based choice

Nature communications, 2020-08, Vol.11 (1), p.4026-4026, Article 4026

2020

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Cross-tissue analysis of blood and brain epigenome-wide association studies in Alzheimer’s disease

Nature communications, 2022-08, Vol.13 (1), p.4852-4852, Article 4852

2022

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Critical evaluation of the reliability of DNA methylation probes on the Illumina MethylationEPIC v1.0 BeadChip microarrays

Epigenetics, 2024-12, Vol.19 (1), p.2333660

2024

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Modulator-Dependent RBPs Changes Alternative Splicing Outcomes in Kidney Cancer

Frontiers in genetics, 2020-03, Vol.11, p.265-265

2020

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PathwayMultiomics: An R Package for Efficient Integrative Analysis of Multi-Omics Datasets With Matched or Un-matched Samples

Frontiers in genetics, 2021-12, Vol.12, p.783713-783713

2021

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Distinct CSF biomarker-associated DNA methylation in Alzheimer's disease and cognitively normal subjects

Alzheimer's research & therapy, 2023-04, Vol.15 (1), p.78-78, Article 78

2023

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Comprehensive Cis-Regulation Analysis of Genetic Variants in Human Lymphoblastoid Cell Lines

Frontiers in genetics, 2019-09, Vol.10, p.806-806

2019

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Face-Off of Facial Injuries in Professional Fighting Sports

Facial plastic surgery & aesthetic medicine, 2023-04, Vol.25 (2), p.191-192

2023

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Distinct sex-specific DNA methylation differences in Alzheimer's disease

Alzheimer's research & therapy, 2022-09, Vol.14 (1), p.133-133, Article 133

2022

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LR Hunting: A Random Forest Based Cell–Cell Interaction Discovery Method for Single-Cell Gene Expression Data

Frontiers in genetics, 2021-08, Vol.12, p.708835-708835

2021

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Single‐cell transcriptional atlas of human breast cancers and model systems

Clinical and translational medicine, 2024-10, Vol.14 (10), p.e70044-n/a

2024

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Highly robust model of transcription regulator activity predicts breast cancer overall survival

BMC medical genomics, 2020-04, Vol.13 (Suppl 5), p.49-10, Article 49

2020

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A SMAD4‐modulated gene profile predicts disease‐free survival in stage II and III colorectal cancer

Cancer reports, 2022-01, Vol.5 (1), p.e1423-n/a

2022

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Bioinformatics detection of modulators controlling splicing factor‐dependent intron retention in the human brain

Human mutation, 2022-11, Vol.43 (11), p.1629-1641

2022

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Endothelial disruptive proinflammatory effects of nicotine and e-cigarette vapor exposures

American journal of physiology. Lung cellular and molecular physiology, 2015-07, Vol.309 (2), p.L175-L187

2015

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MethReg: estimating the regulatory potential of DNA methylation in gene transcription

Nucleic acids research, 2022-05, Vol.50 (9), p.e51-e51

2022

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RNA alternative splicing impacts the risk for alcohol use disorder

Molecular psychiatry, 2023-07, Vol.28 (7), p.2922-2933

2023

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Stimulating Soluble Guanylyl Cyclase with the Clinical Agonist Riociguat Restrains the Development and Progression of Castration-Resistant Prostate Cancer

Cancer research (Chicago, Ill.), 2024-10

2024

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MIAMI-AD (Methylation in Aging and Methylation in AD): an integrative knowledgebase that facilitates explorations of DNA methylation across sex, aging, and Alzheimer's disease

Database : the journal of biological databases and curation, 2024-07, Vol.2024

2024

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Triptolide and its prodrug Minnelide target high-risk MYC-amplified medulloblastoma in preclinical models

The Journal of clinical investigation, 2024-08, Vol.134 (15), p.1-17

2024

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Transcriptome Meta-Analysis of Triple-Negative Breast Cancer Response to Neoadjuvant Chemotherapy

Cancers, 2023-04, Vol.15 (8), p.2194

2023

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Multi-omics analysis identifies therapeutic vulnerabilities in triple-negative breast cancer subtypes

Integration of Alzheimer’s disease genetics and myeloid genomics identifies disease risk regulatory elements and genes

Ensemble methods of rank-based trees for single sample classification with gene expression profiles

Dynamic transcriptional activity and chromatin remodeling of regulatory T cells after varied duration of interleukin-2 receptor signaling

Neural mechanisms underlying the effects of physical fatigue on effort-based choice

Cross-tissue analysis of blood and brain epigenome-wide association studies in Alzheimer’s disease

Critical evaluation of the reliability of DNA methylation probes on the Illumina MethylationEPIC v1.0 BeadChip microarrays

Modulator-Dependent RBPs Changes Alternative Splicing Outcomes in Kidney Cancer

PathwayMultiomics: An R Package for Efficient Integrative Analysis of Multi-Omics Datasets With Matched or Un-matched Samples

Distinct CSF biomarker-associated DNA methylation in Alzheimer's disease and cognitively normal subjects

Comprehensive Cis-Regulation Analysis of Genetic Variants in Human Lymphoblastoid Cell Lines

Face-Off of Facial Injuries in Professional Fighting Sports

Distinct sex-specific DNA methylation differences in Alzheimer's disease

LR Hunting: A Random Forest Based Cell–Cell Interaction Discovery Method for Single-Cell Gene Expression Data

Single‐cell transcriptional atlas of human breast cancers and model systems

Highly robust model of transcription regulator activity predicts breast cancer overall survival

A SMAD4‐modulated gene profile predicts disease‐free survival in stage II and III colorectal cancer

Bioinformatics detection of modulators controlling splicing factor‐dependent intron retention in the human brain

Endothelial disruptive proinflammatory effects of nicotine and e-cigarette vapor exposures

MethReg: estimating the regulatory potential of DNA methylation in gene transcription

RNA alternative splicing impacts the risk for alcohol use disorder

Stimulating Soluble Guanylyl Cyclase with the Clinical Agonist Riociguat Restrains the Development and Progression of Castration-Resistant Prostate Cancer

MIAMI-AD (Methylation in Aging and Methylation in AD): an integrative knowledgebase that facilitates explorations of DNA methylation across sex, aging, and Alzheimer's disease

Triptolide and its prodrug Minnelide target high-risk MYC-amplified medulloblastoma in preclinical models

Transcriptome Meta-Analysis of Triple-Negative Breast Cancer Response to Neoadjuvant Chemotherapy

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